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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGGTCAGTCTACATAAATATTCAAAAATTTGTGCAGTTCCAGTTAACAGTCAACATTGTTGCTCTCATGATCAACTTTGTTTCTGCATGCATCTCAGgtgcgttcatccattaaatctttttccttacaacttaagatttggcgtctatataataaagatgacttagaaatttctttccaagtaattttcag

Basic information

species Vitis vinifera
transcript Vv13s0158g00360.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0158g00360.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G357620_T01 (Zea mays), 5'ss of exon 5
GGCCGGTCAGTCTACATAAATATTCAAAAATTTGTGCAGTTCCAGTTAACAGTCAACATTGTTGCTCTCATGATCAACTTTGTTTCTGCATGCATCTCAGgtgcgttcatc--cattaaatctttttccttacaacttaagatttggcgtctatataataaagatgacttagaa-atttctttccaa-gtaattttcag-
|| ||  | || |||||||| || ||||| || |||||||||||| | || ||||||||||||||| |  | |||||||| || || ||||||||  ||||||||  ||||  |||      |  |   |     ||  |      |  |    ||  |     |  |  | || | |  | | ||  |||  || ||  
GGTCGTGCGGTTTACATAAACATCCAAAAGTTCGTGCAGTTCCAGCTGACTGTCAACATTGTTGCTTTGGTCATCAACTTCGTCTCAGCATGCATTACAGgtgcgcgcatcatcatctgtagtagtgtttcctttctccaatgccagtattgccatggtcgttttacccaaaaacactgttctgcactgtagattgcatt

upper sequence: Vv13s0158g00360.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G104730_T02 (Zea mays), 5'ss of exon 6
GGCCGGTCAGTCTACATAAATATTCAAAAATTTGTGCAGTTCCAGTTAACAGTCAACATTGTTGCTCTCATGATCAACTTTGTTTCTGCATGCATCTCAGg--tgcgttcatccat-taaatctttttccttacaacttaa--gatttgg----cgtctatataataaagatgacttagaa-atttctttccaagtaattttcag------------------------------------------
|||||  | ||||||||||| || || || || |||||||| ||| | || ||||||||||| |||||  | ||||||||||| || ||||||||  ||||  || |  |||  |  ||   | ||   ||| |||  |||  |   |||     | || |  | | |      ||| | | || |  | | | |  || |  ||                                          
GGCCGCGCGGTCTACATAAACATCCAGAAGTTCGTGCAGTTTCAGCTGACCGTCAACATTGTGGCTCTGGTCATCAACTTTGTCTCGGCATGCATTACAGgtttggggccatttacctatgacattcctcttgcaatataatggccatgggccatggctgttcagttagtggttcttggtatatctgctgctatgccatctggagtaacagtgctttgagtgctgtactactgtactgctacgacag

upper sequence: Vv13s0158g00360.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G35970.1 (Glycine max), 5'ss of exon 5
GGCCGGTCAGTCTACATAAATATTCAAAAATTTGTGCAGTTCCAGTTAACAGTCAACATTGTTGCTCTCATGATCAACTTTGTTTCTGCATGCATCTCAGgtgcgttcatccattaaatctttt-------tccttacaactta-agatttggcgtctatataataaagatgacttagaaatttctttccaagtaattttcag
|||||  | || || || ||||| ||||| ||||| ||||||||||||||||| ||  |||||||||||||| | || |||||||| |||||| | ||||||   | ||| ||   |   |||        || || ||    | ||||      |   |  |||  ||||||||    |||  |     || |   ||||||
GGCCGTGCTGTTTATATTAATATACAAAAGTTTGTCCAGTTCCAGTTAACAGTTAATGTTGTTGCTCTCATGCTGAATTTTGTTTCAGCATGCGTGTCAGgta-atacatacagctagcttttcaagactatcttttcaggccatagataaatttttggttcaattcagatgact----aatcacagcagaaatccatttcag

upper sequence: Vv13s0158g00360.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G01360.1 (Glycine max), 5'ss of exon 6
GGCCGGTCAGTCTACATAAATATTCAAAAATTTGTGCAGTTCCAGTTAACAGTCAACATTGTTGCTCTCATGATCAACTTTGTTTCTGCATGCATCTCAGgtgcgttcatccattaaatctttt-------tccttacaacttaagatttggcgtcta-tataataaagatgacttagaaatttctttccaagtaattttcag
|||||  | || || || ||||| ||||| ||||| ||||| ||||||||||| ||  |||| ||||||||| | || |||||||| |||||| | ||||||   | ||| ||   ||  ||||       || || ||  | |    |     | || |  |||  |||||||| |     |     |  | |   ||||||
GGCCGTGCTGTTTATATTAATATACAAAAGTTTGTCCAGTTTCAGTTAACAGTTAATGTTGTGGCTCTCATGCTGAATTTTGTTTCAGCATGCGTGTCAGgta-atacatacagctaactttttaagacgatcttttcaggtcatagctaaatatttagttcaatttagatgactaa-----tcacagcagaatccatttcag

upper sequence: Vv13s0158g00360.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
GGCCGGTCAGTCTACATAAATATTCAAAAATTTGTGCAGTTCCAGTTAACAGTCAACATTGTTGCTCTCATGATCAACTTTGTTTCTGCATGCATCTCAGgtgcgttc----atccattaaatctttttccttacaacttaagatttggcgtctatataataaagatgacttagaaatttctttccaagtaattttcag
|| ||  | || || ||||| ||||| || ||||| ||||||||| |||| || ||  | |||||||| || ||||||||||| ||||| |||||| ||||| ||       | ||| | || |    || ||      ||   |||||     ||||| |||  ||  |||     ||  ||||||            
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacgacagaaaaaccaatcaaacaccatctttct--tctagcgtttggt-caaatatagtaaccatttcttttggtttcttttccag-----------

upper sequence: Vv13s0158g00360.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G57330.1 (Arabidopsis thaliana), 5'ss of exon 5
GGCCGGTCAGTCTACATAAATATTCAAAAATTTGTGCAGTTCCAGTTAACAGTCAACATTGTTGCTCTCATGATCAACTTTGTTTCTGCATGCATCTCAGgtgcgttcatccattaaatctttttccttacaacttaagatttggcgtctatataataaagatgacttagaaatttctttccaagtaattttcag
|| ||  | || || || || || || || ||||| ||||||||| |||| || ||  |||||||||| || ||||||||||| ||||| |||||| | |||  ||  |  ||  | |  |      ||   ||  | |||||      |  |||| |     |  | || |||   | |        |||||||
GGACGTGCTGTGTATATCAACATCCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTTGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACTGgtaagtaaaatcaa-acacatgcacaattttcaccaatgattt-----ttgaataaca-----gtttcagtaatgattgttttgcaccttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37188333|gb|CF607682.1|CF607682
EST:     TTGCTCTCATGATCAACTTTGTTTCTGCATGCATCTCAG                         GATCTGCTCCTCTTACTGCTGTCCAGTTGCTCTGGGTGAATATGATCATGG
genomic: TTGCTCTCATGATCAACTTTGTTTCTGCATGCATCTCAGgtgcgttcat ... taattttcagGATCTGCTCCTCTTACTGCTGTCCAGTTGCTCTGGGTGAATATGATCATGG