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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGGGATTTGCTCCGGAGGGAACTTATAAATGAGAAGGTAGACATTTGGgtaagtcagttatactttatttttgttcaatgagtctgggttatgatttgctattcaagaagttttctgtgctttttaatacaaccaaaacctgaaattcatctttttgcag

Basic information

species Vitis vinifera
transcript Vv13s0156g00640.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29786212|gb|CB343818.2|CB343818
EST:     TGTGGGATTTGCTCCGGAGGGAACTTATAAATGAGAAGGTAGACATTTGG                         GCGCTTGGGTGCCTCCTCTTTCGCATATGCTACTTCAAATCTGCATTTGAT
genomic: TGTGGGATTTGCTCCGGAGGGAACTTATAAATGAGAAGGTAGACATTTGGgtaagtcagt ... ctttttgcagGCGCTTGGGTGCCTCCTCTTTCGCATATGCTACTTCAAATCTGCATTTGAT
EST: gi|110730727|gb|EE108139.1|EE108139
EST:     AGAAGGTAGACATTTGG                         GCGCTTGGGTGCCTCCTCTTTCGCATATGCTACTTCAAATCTGCATTTGAT
genomic: AGAAGGTAGACATTTGGgtaagtcagt ... ctttttgcagGCGCTTGGGTGCCTCCTCTTTCGCATATGCTACTTCAAATCTGCATTTGAT