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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAACCAGTACTTTGTTGCTTCAGATGTTGGGAATGGAAAGATGCAATGGTATGCCTTCAATAGGGAGCCTCCCATGAATAATACTGATTCTCCCAAAGgtatctccctcaaaatatgcttgtggtaatgttacttttaaaggaactcaattctatgattttgagaaaccttccttttacattctgcag

Basic information

species Vitis vinifera
transcript Vv13s0156g00350.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0156g00350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G00260.1 (Glycine max), 5'ss of exon 5
---TTGAACCAGTACTTTGTTGCTTCAGATGTTGGGAATGGAAAGATGCAATGGTATGCCTTCAATAGGGAGCCTCCCATGAATAATACTGATTCTCCCAAAGgtatctccctcaaaatatgcttgtggtaatgttacttttaaaggaactcaattctatgattttgagaaaccttccttttacattctgcag
   ||||||||||||||||||||||||||||||||  |||| |||||||| |||||||| ||| || |||| || ||    | | |  ||   |  ||  ||||||| |    |      ||  |||   |||  |  || |||  |||   ||||| ||   | ||||  ||                    
GGCTTGAACCAGTACTTTGTTGCTTCAGATGTTGGCCATGGGAAGATGCAGTGGTATGCTTTCCATGGGGAACCCCCTTCAAGTGACCCT---TTCCCAGAAGgtatgtttaccttttgttgtgtgtatcaattgttattgtaattgaaacaaattc-atttgtctgagttacag------------------

upper sequence: Vv13s0156g00350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G00260.2 (Glycine max), 5'ss of exon 5
---TTGAACCAGTACTTTGTTGCTTCAGATGTTGGGAATGGAAAGATGCAATGGTATGCCTTCAATAGGGAGCCTCCCATGAATAATACTGATTCTCCCAAAGgtatctccctcaaaatatgcttgtggtaat-gttact----tttaaaggaactcaattctatgattttgagaaaccttccttttacattctgcag
   ||||||||||||||||||||||||||||||||  |||| |||||||| |||||||| ||| || |||| || ||    | | |  ||   |  ||  ||||||| |    |      ||  |||   ||| |||| |    || |||  || ||| || | ||| ||  || |                      
GGCTTGAACCAGTACTTTGTTGCTTCAGATGTTGGCCATGGGAAGATGCAGTGGTATGCTTTCCATGGGGAACCCCCTTCAAGTGACCCT---TTCCCAGAAGgtatgtttaccttttgttgtgtgtatcaattgttattgtaattgaaacaaattcatttgtctgagttacagcag---------------------