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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGCCTGAAGAAACTGAAGGCAGAATGCGGAAAGATTCAACTAGGGAATATTACTGTTGATATGgtaatgatagtctctgtttattctgatgtttgtaagtttacaatcttagagcaacacgtacatatattacagtgtgtaacctctcactgagttatcactgtcacaattgcaaag

Basic information

species Vitis vinifera
transcript Vv13s0156g00180.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856687|gb|DT005742.1|DT005742
EST:     TGAAGGCAGAATGTGGAAAGATTCAACTAGGGAATATTACTGTTGATATG                         GTACTTGGTGGAATGAGAGGAATGACAGGGTTGCTGTGGGAAACCTCGTTG
genomic: TGAAGGCAGAATGCGGAAAGATTCAACTAGGGAATATTACTGTTGATATGgtaatgatag ... aattgcaaagGTACTTGGTGGAATGAGAGGAATGACAGGGTTGCTGTGGGAAACCTCGTTG
EST: gi|161710026|gb|FC060587.1|FC060587
EST:     TGAAGGCAGAATGCGGAAAGATTCAACTAGGGAATATTACTGTTGATATG                         GTACTTGGTGGAATGAGAGGAATGACAGGGTTGCTGTGGGA
genomic: TGAAGGCAGAATGCGGAAAGATTCAACTAGGGAATATTACTGTTGATATGgtaatgatag ... aattgcaaagGTACTTGGTGGAATGAGAGGAATGACAGGGTTGCTGTGGGA
EST: gi|161718322|gb|FC064764.1|FC064764
EST:     TGAAGGCAGAATGCGGAAAGATTCAACTAGGGAATATTACTGTTGATATG                         GTACTTGGTGGAATGAGAGGAATGACAGGGTTGCTGTGGGAAACCTCGTTG
genomic: TGAAGGCAGAATGCGGAAAGATTCAACTAGGGAATATTACTGTTGATATGgtaatgatag ... aattgcaaagGTACTTGGTGGAATGAGAGGAATGACAGGGTTGCTGTGGGAAACCTCGTTG
EST: gi|161710757|gb|FC059399.1|FC059399
EST:     TGAAGGCAGAATGTGGAAAGATTCAACTAGGGAATATTACTGTTGATATG                         GTACTTGGTGGAATGAGAGGAATGACAGGGTTGCTGTGGGAAACCTCGTTG
genomic: TGAAGGCAGAATGCGGAAAGATTCAACTAGGGAATATTACTGTTGATATGgtaatgatag ... aattgcaaagGTACTTGGTGGAATGAGAGGAATGACAGGGTTGCTGTGGGAAACCTCGTTG