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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCGTTTGTCAGAGAATGAAGCTCGCTTCTATGCAGCTGAAGTTGTAGATGCTCTTGAATATATTCATAGTCTAGGATTGATACACCGGGATATTAAGgtattttaattgcctatacaatatttcctttgcatgtgaaaattattaacttttcatgaattgcag

Basic information

species Vitis vinifera
transcript Vv13s0074g00100.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G34430.1 (Glycine max), 5'ss of exon 4
AGGTCGTTTGTCAGAGAATGAAGCTCGCTTCTATGCAGCTGAAGTTGTAGATGCTCTTGAATATATTCATAGTCTAGGATTGATACACCGGGATATTAAGgtattttaattgc----ctatacaatatttcctttgcatgtgaaaat-----tattaacttttcatgaattgcag
||||||| | ||||||||||| || || |||||||||||||||||| | |||||||||||||| || |||| | | ||| | ||||| || |||||||||||| ||   | ||     |||||   ||         || ||   ||     |||||| |||   | || |||||
AGGTCGTCTATCAGAGAATGAGGCACGATTCTATGCAGCTGAAGTTATCGATGCTCTTGAATACATACATAATTTGGGAGTCATACATCGTGATATTAAGgtagttctgtggcatgattatactgcatcattgccatatatggccatgtgaatattaaatttct-tcaactgcag

upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 4
AGGTCGTTTGTCAGAGAATGAAGCTCGCTTCTATGCAGCTGAAGTTGTAGATGCTCTTGAATATATTCATAGTCTAGGATTGATACACCGGGATATTAAGgtattttaattgc----ctatacaatatttcctttgcatgtgaaaat-----tattaacttttcatgaattgcag
||||||| | |||||| |||| || || |||||||||||||||||||| |||||||| ||||| || |||| | | ||| | ||||| || |||||||||||| ||   | ||     |||||   ||         || ||   ||     |||||| |||   | || |||||
AGGTCGTCTATCAGAGGATGAGGCACGATTCTATGCAGCTGAAGTTGTTGATGCTCTCGAATACATACATAATTTGGGAGTCATACATCGTGATATTAAGgtagttccgtggcatggttatactgcatcattgccatatatggctatgtgaatattaaatttct-tcaactgcag

upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G04510.2 (Arabidopsis thaliana), 5'ss of exon 4
AGGTCGTTTGTCAGAGAATGAAGCTCGCTTCTATGCAGCTGAAGTTGTAGATGCTCTTGAATATATTCATAGTCTAGGATTGATACACCGGGATATTAAGgta-ttttaattgcctatacaatatttcctttgcatgtgaaaat-----tattaa---cttttcatgaa-ttgcag
||||||  | || ||| |||||||||| |||||  | || |||||||| ||||||||||| ||||| |||||| | ||| |||| || || |||||||||||| |||   || |  |||   | | |  | ||    | | |||     |  |||    ||||| |||| | | ||
AGGTCGGCTATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTGGATGCTCTTGAGTATATACATAGTATGGGACTGATTCATCGAGATATTAAGgtagtttctctttcgaatagcttctcttttatggtcttaacaatagctgtgctaagtgtttttcttgaaatggtag

upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G10540.1 (Arabidopsis thaliana), 5'ss of exon 4
AGGTCGTTTGTCAGAGAATGAAGCTCGCTTCTATGCAGCTGAAGTTGTAGATGCTCTTGAATATATTCATAGTCTAGGATTGATACACCGGGATATTAAGgta-ttttaattgcctatacaatatttcctttg-catgtgaaaattattaacttttcatgaattgcag-------------------
||||||| | || ||| |||||||||| |||||    || |||||||| ||||||||||| ||||| |||| | | ||| ||||||| || ||||||||||||  ||   || |  |||  || | |  |  |       ||    || |  ||   |  ||||                       
AGGTCGTCTATCTGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTTGATGCTCTTGAGTATATACATAATATGGGACTGATACATCGAGATATTAAGgtagcttctctttcacatatcatctcttataagatccaacaagggcatcattttgctaacaattatcccttaattttgattgtgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717324|gb|FC068850.1|FC068850
EST:     ATGCTCTTGAATATATTCATAGTCTAGGATTGATACACCGGGATATTAAG                         CCGGAGAACTTGCTACTTACTGCAGATGGACATATCAAAATTGCTGATTTT
genomic: ATGCTCTTGAATATATTCATAGTCTAGGATTGATACACCGGGATATTAAGgtattttaat ... tgaattgcagCCGGAGAACTTGCTACTTACTGCAGATGGACATATCAAAATTGCTGATTTT