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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAAGAAGATTTGGGTCCCTAAAGCTTCCTTATAATCAACAGAAGAGCTGGGCTGGTAGCATTTCCATGTTTGTATTTGGCTTCTTGATTTCAATTGGgtgggttttgaaccccttctttccgccaacgtcaatgatggtattttacttgctccataaggattttcgaacttggcatgagaattttccttcattttgtag

Basic information

species Vitis vinifera
transcript Vv13s0074g00040.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00040.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G33150.1 (Glycine max), 5'ss of exon 5
---------------TGGGAAGAAGATTTGGGTCCCTAAAGCTTCCTTATAATCAACAGAAGAGCTGGGCTGGTAGCATTTCCATGTTTGTATTTGGCTTCTTGATTTCAATTGGgtgggttttgaaccccttctttccgccaacgtcaatgatggtattttacttgctccataaggattttcgaacttggcatgagaattttccttcattttgtag
               | || ||||||| ||| ||| | ||| ||||||| |||||||| ||||| |  ||||||||||| || ||| |||| ||||| |||||| ||||||||||||| |||   | |   | |    |  |    | | | ||  |  |   |||    | ||                                           
GTATAGCTGATATCATTGGTAGAAGATATGGATCCTTGAAGATTCCTTACAATCAACATAAGAGTTTAGCTGgtagcatgtctatgcttgtctttggattcttggtttcaattgggtgtgttacaatcttatccaactcttccttttgacttat--tgatcagcttcagtctta-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349827139|gb|FQ421412.1|FQ421412
EST:     TGGGCTGGTAGCATTTCCATGTTTGCATTTGGCTTCTTGATTTCA-TTGG                         GATGCTTCACTACTTTTCAGCCCTGGGGTACTTCCAGCTAGATTGG
genomic: TGGGCTGGTAGCATTTCCATGTTTGTATTTGGCTTCTTGATTTCAATTGGgtgggttttg ... cattttgtagGATGCTTCACTACTTTTCAGCCCTGGGGTACTTCCAGTTAGATTGG
EST: gi|351029624|gb|FQ427464.1|FQ427464
EST:     TGGGCTGGTAGCATTTCCATGTTTGTATTTGGCTTCTTGATTTCAATTGG                         GATGCTTCACTACTTTTCAGCCCTGGGGTACTTCCAGTTAGATTGGTTTTG
genomic: TGGGCTGGTAGCATTTCCATGTTTGTATTTGGCTTCTTGATTTCAATTGGgtgggttttg ... cattttgtagGATGCTTCACTACTTTTCAGCCCTGGGGTACTTCCAGTTAGATTGGTTTTG