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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactacttaaggattctggaattgaattttctcatccaaaagaaaatgaaatttagttgaatcaatttctgatgtgagaatgtatgtttaatgggtattgatcag

Basic information

species Vitis vinifera
transcript Vv13s0067g03490.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g72330.1 (Oryza sativa), 5'ss of exon 4
GAGTCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgag---aaaactacttaaggattctggaattgaattttctcatccaaaagaaaatgaaatttagt---tgaatcaatttctgatgtgagaatgtatgtttaatgggtattgatcag
|  || || ||  |||| ||||||||||||||||||||||| ||||||||  | ||| ||||||| ||||||||||   |||| |   |  |   | |    ||   ||  || ||||   | |  ||      | ||   |||  ||   ||  |       |   | ||                  
GGATCATCTTCATTGAAGGACATACCAGTTGTGATCATGTCTTCTGAGAATGTGCCTGCAAGGATCAACAGgtgagctgaaaattctatctgagctgtccccttattttagcttatcctggaaattattgctgctggtccatgaggcatactcctacaaatctaccaaggt------------------

upper sequence: Vv13s0067g03490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os11g04720.1 (Oryza sativa), 5'ss of exon 4
GAGTCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactacttaaggattctggaattgaattttctcatccaaaagaaaatgaaatttagttgaatcaatttctgatgtgagaatgtatgtttaatgggtattgatcag
|| || || | | | |  ||||| ||||||||||||||||| || || ||||| ||||||||||| || ||||||| |     |||| ||||     |  | | ||    |||| |  | || |  |   |    |||     | | ||   |||  |||      | |   ||   |||   
GAATCGTCTTATTTAAGGGACATCCCAGTTGTGATCATGTCATCGGATAACATTCCTTCAAGGATCAATAGgtgagca---ctcttatggatctaccatattatttcgaccatctattacaatacaagcatcttatga-----tatttgg-atgaacatgccaaagtcagatgtgcagat---

upper sequence: Vv13s0067g03490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os12g04500.1 (Oryza sativa), 5'ss of exon 4
GAGTCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactacttaaggattctggaattgaattttctcatccaaaagaaaatgaaatttagttgaatcaatttctgatgtgagaatgtatgtttaatgggtattgatcag
|| || || | | | |  ||||| ||||||||||||||||| || || ||||| ||||||||||| || ||||||  | ||| |||| ||||     |  | | ||    |||| |  | || |  |   |    |||     | | ||   |||  |||      | |   ||   |||   
GAATCGTCTTATTTAAGGGACATCCCAGTTGTGATCATGTCATCGGATAACATTCCTTCAAGGATCAATAGgtga--acact-cttatggatctaccatattatttcgaccatctattacaatacaagcatcttatga-----tatttgg-atgaacatgccaaagtcagatgtgcagat---

upper sequence: Vv13s0067g03490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G129954_T01 (Zea mays), 5'ss of exon 4
GAGTCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactacttaaggattctggaattgaattttctcatccaaaagaaaatgaaatttagttgaatcaatttctgatgtgagaatgtatgtttaatgggtattgatcag
||||| || ||||| | ||| || || || ||||||||||||||||||||||| ||||||||||| || ||||||| |  |  ||  || | |||   |||    ||    ||| |||  | | |    ||||   ||| ||| |  | |  | | |||    |   |||    | |      
GAGTCGTCGTCTCTCAGAGATATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtcagct--agcactctactatttgtcttgtggatctaaacaacagtt---tttaagggaaacaaatcttaagttaaaaattggggaaaaatta-cact------

upper sequence: Vv13s0067g03490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G21650.1 (Glycine max), 5'ss of exon 4
GAGTCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgag-aaaactactt--aaggat-tctggaattgaattttct----catccaaaagaaaatgaaatttagttgaatcaatttctgatgtg---agaatgtatgtttaatgggt-attgatcag----------------------------------------------------------
|| |||  |||||| |||||||||||||| ||||| |||||||| |||||  ||||  |||||||||||||||||| |||| ||| |  ||  || || |||||  |||    |     |   |  ||| |   ||| | |         |||| ||| |     | ||  ||| ||       | |   ||  |                                                          
GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATTAACAGgtgaggaaaattacctccaattatatcaggaatccaatacaataaaaaaattattagagacccaaaataaaaaatgatcatttatgagggatccaaaacatattttagccaattcaaaaatttggattgcatccatgactgaacttcaaatctaacaagacattcatttttgtttgtaccag

upper sequence: Vv13s0067g03490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G26770.1 (Glycine max), 5'ss of exon 4
GAGTCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactacttaaggattctggaattgaattttctcatccaaaagaaaatgaa--atttagttgaat-caatttctgatgtgagaatgtatgtttaatgggtattgatcag
|| |||  |||||| ||| |||||||||||||||| |||||||| |||||  | || |||||||| ||||||||||  || |      | || ||  ||         |  |||||| |  ||   ||  |||| ||  | | ||| |||  || | || | |    |   |||| ||    ||| 
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgagggaatt------gaatcctataacc-------ccaatccaacaccaacctaattattttgtaaatttcaaattcacatattaggagg-gcatcacatggctaaatttca-

upper sequence: Vv13s0067g03490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G29250.1 (Glycine max), 5'ss of exon 4
GAGTCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaact--acttaaggattctggaattgaattttctcatc-caaaagaaaatgaaatttagttgaat---caatttctgatgtgagaatgtatgtttaatgggtattgatcag------------------------
|| |||  |||||| |||||||||||||| ||||| |||||||| |||||  ||||  ||||||| ||||||||||  || |  | |  |     |   | || |||| | |||   ||||| | | |    |||  |  |||   ||| |||||||   |  |  |   |  | | |  ||  | ||                         
GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATCAACAGgtgagggaaattgaatccaattaccaaaattttaattatgtcaagacaaaatatatttgtttttcttcaaattcacaaattctgattgcatcacatgactgaacttgaaatctaacaagaccttcatttttgtttgtatcag

upper sequence: Vv13s0067g03490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G37770.1 (Glycine max), 5'ss of exon 4
GAGTCTTCATCTCTGAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACATCCCTTCAAGGATTAACAGgtgagaaaactacttaaggattctggaattgaattttctcatccaaaagaaaatgaaatttagttgaatcaatttctgatgtgagaat-gtatgtttaatgggtattgatcag
|| |||  |||||| ||| |||||||||||||||| |||||||| |||||  | || |||||||| |||||||||| || |    |||  | ||   |    |    |  || |  ||  |   ||||||||  |  |||  |  | | ||| | | ||   |||  |||     | | |    
GAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGgtgaggaatcc---taa--actcccaatccaa----taccaacttaattattttgaaattt--tcaaattcacatattatgggggcatcacatggctaaatttgactaaca--