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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTATACCAGACTGAATGATGAAACTTCCCATATATCCCCAGAGAAAGTTCTAATATTCTCTCAGTTTCTTGAGCATATACATGTTATTGAACAGCAGgtagctgcaatctgccttaaactagggctgaccttagtatgcttttcttgatgctaactccaattttttttttttcctttgccag

Basic information

species Vitis vinifera
transcript Vv13s0067g03330.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g72310.1 (Oryza sativa), 5'ss of exon 4
AGATTATACCAGACTGAATGATGAAACTTCCCATATATCCCCAGAGAAAGTTCTAATATTCTCTCAGTTTCTTGAGCATATACATGTTATTGAACAGCAGgtagctgcaatctgccttaaactagggctgaccttagtatgcttttcttgatgctaactccaattttttttttttcctttgccag
|||  |||  |   || | |         | || | |   || || |||||  ||||||||||||||||||| |||||||| ||||| ||||| |||||||||  |   |  ||  | | ||| | | | || | || ||| |   || | || |  ||   || |  | | | | |        
AGACCATAATAATGTGGAGGGCAGGTTACCACACACAATGCCTGACAAAGTAATAATATTCTCTCAGTTTCTGGAGCATATCCATGTGATTGAGCAGCAGgtaaatttgaagtgg-tcatact-gcgtttacttaagaatg-tgaactagttggtcgct--gatctcctctctgttcag------

upper sequence: Vv13s0067g03330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G379804_T01 (Zea mays), 5'ss of exon 3
---AGATTATACCAGACTGAATGATGAAACTTCCCATATATCCCCAGAGAAAGTTCTAATATTCTCTCAGTTTCTTGAGCATATACATGTTATTGAACAGCAGgtagctgcaatctgccttaaactagggctgaccttagtatgcttttcttgatgctaactc-caattttttttttttcctttgccag
     ||| ||  | |||   | || ||    | ||   |   |  || |||||| |||| || ||||||||||| |||||||| || || ||||||||||||||   |   |  | | ||| ||    ||||  |||| ||    | |    ||  ||  |  | |||  | | |||||   |  |||
TGGTCATTCTAATACACTATCTTATCAA---CCACAGGCAATGCTGGACAAAGTTATAATTTTTTCTCAGTTTCTAGAGCATATTCACGTGATTGAACAGCAGgtttgtttgaaatac-ttatacc---gctggtcttaataaatatgtga-aatattagttgaccattggtctcttttctgct--cag

upper sequence: Vv13s0067g03330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G28970.1 (Glycine max), 5'ss of exon 6
--AGATTATACCAGACTGAATGATGAAACTTCCCATATATCCCCAGAGAAAGTTCTAATATTCTCTCAGTTTCTTGAGCATATACATGTTATTGAACAGCAGgtagctgcaatctgccttaaactagggctgaccttagtatgcttttcttgatgctaactc--caattttttttttttcctttgccag-----------------------------------
  |||  ||     | |||        |   || || |   ||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||| | |   | |||   |   |  |  ||| ||| |     || | |  ||  ||  |        | | |   ||| ||||| |                                    
TCAGAC-ATGTTTTA-TGAGCAGCACTAAGACCAATTTGAACCCTGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGgta-cagttttgtgctgcattttgtgtgtgatctttggtgaattgtttctattttatttttttggcatctgtggattcttttgcaaatgatcaaactattaaattggatttctctttgccag

upper sequence: Vv13s0067g03330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G21600.1 (Glycine max), 5'ss of exon 4
--AGATTATACCAGACTGAATGATGAAACTTCCCATATATCCCCAGAGAAAGTTCTAATATTCTCTCAGTTTCTTGAGCATATACATGTTATTGAACAGCAGgtagctgcaatctgccttaaactagggctgaccttagtatgcttttcttgatgctaactcc-aattttttttttttcctttgccag-----------------------------------
  |||  ||     | |||        |   || || |   ||| ||||||||||| ||||| ||||| |||||||||||||||||||  ||||||||||||||| | |   | ||||  |   |  |  ||| |||   |||  ||  |  ||  ||  |       | | |   ||| ||||| |                                    
TCAGAC-ATGTTCTA-TGAGCAGCACTAAGACCAATTTGAACCCTGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGCCATTGAACAGCAGgta-cagttttatgccgcattttgtgtgtgatcttt-catgaattgttctattttattttttggcatctgtgaattcttttgcaaatgatcaaactattaaattggatttctctttggcag