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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCTACTTCAGAACCGGACTCTTTATCTGGCTTGGAGCCCCGGAACATGAGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcacaaagctatattattcccttttccctttctttttcttttcttattctacttgtccatttctcgtttccttttatcttttaattggcatgtctaagtatcttggcttgcctctgccag

Basic information

species Vitis vinifera
transcript Vv13s0067g03320.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34416831|gb|CF415585.1|CF415585
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|110423901|gb|EC990254.1|EC990254
EST:     AGGAGGCCTTCATCATCGTCTGTTGTTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|110699314|gb|EE076202.1|EE076202
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|110726136|gb|EE101653.1|EE101653
EST:     AGGAGGCCTTCATCATCGTCTGTTGTTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|351043024|gb|FQ443866.1|FQ443866
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|110730208|gb|EE107028.1|EE107028
EST:     AGGAGGCCTTCATCATCGTCTGTTGTTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|351029495|gb|FQ436889.1|FQ436889
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|46918368|gb|CN547697.1|CN547697
EST:     GAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: GAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|349829621|gb|FQ421139.1|FQ421139
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|110410730|gb|EC976422.1|EC976422
EST:     AGGAGGCCTTCATCATCGTCTGTTGTTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|110732400|gb|EE107653.1|EE107653
EST:     AGGAGGCCTTCATCATCGTCTGTTGTTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|349827978|gb|FQ422846.1|FQ422846
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|87585501|gb|DY474192.1|DY474192
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|30301939|gb|CB978733.1|CB978733
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|110685295|gb|EE063554.1|EE063554
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|110367404|gb|EC931336.1|EC931336
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|349825323|gb|FQ418055.1|FQ418055
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|110726723|gb|EE102752.1|EE102752
EST:     AGGAGGCCTTCATCATCGTCTGTTGTTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|22008796|gb|BQ793830.1|BQ793830
EST:     CCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATGTG
genomic: CCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|18458749|gb|BM437027.1|BM437027
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|110381982|gb|EC938169.1|EC938169
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|30301871|gb|CB978665.1|CB978665
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|351014234|gb|FQ434823.1|FQ434823
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|351016330|gb|FQ446190.1|FQ446190
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|110727163|gb|EE103612.1|EE103612
EST:     AGGAGGCCTTCATCATCGTCTGTTGTTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|56409315|gb|CX017567.1|CX017567
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|26265335|gb|CA816398.1|CA816398
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|349827894|gb|FQ422762.1|FQ422762
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGTATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|56409393|gb|CX017645.1|CX017645
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|110710077|gb|EE086097.1|EE086097
EST:     AGGAGGCCTTCATCATCGTCTGTTGTTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|349824073|gb|FQ417460.1|FQ417460
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|83276943|gb|DV940951.1|DV940951
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATTTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG
EST: gi|83275823|gb|DV939831.1|DV939831
EST:     AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAG                         GCCAGTTCCAGTTTCCCAGGCATCTG
genomic: AGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcaca ... cctctgccagGCCAGTTCCAGTTTCCCAGGCATCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACCTACTTCAGAACCGGACTCTTTATCTGGCTTGGAGCCCCGGAACATGAGGAGGCCTTCATCATCGTCTGTTGCTGGAGGTTTACCTCCATTGGGAAGgttcttcacaaagctatattattcccttttccctttctttttcttttcttattctacttgtccatttctcgtttccttttatcttttaattggcatgtctaagtatcttggcttgcctctgccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG