Sequence
atgc intronic sequence ATGC exonic sequenceATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgttgagactgtttttttatgacagtgctgatatgtcgatgggcatttgcatgtctacttgattgttataacctggcctgcagtgtctttaactt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os05g07670.1 (Oryza sativa), 5'ss of exon 4
ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgttgagactgtttttttatgacagtgctgatatgtcgatgggcatttgcatgtctacttgattgttataacctggcctgcagtgtctttaactt
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ATGACAAAGCTGGCTATCATCCCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGgtttgtgtttta--tacctttgtgcgcccgtgtgatgatgtct-tgagctaacccttgtctggattgacactgtag------------------------
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g07310.2 (Oryza sativa), 5'ss of exon 3
--------------------------------ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgttgag-act----gtttttttatgacagtgctgat-atgtcgatgggcatttgcatgtctacttgattgttataacctggcctgcagtgtctttaactt---------------------------
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ATGCTAAAATGCTGAATGCTCTTTGTTTTCAGATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAGgtttgtatttaatacttcatgtcctttattcagtttgataattatgaagtttgtatttaatacgtcttgtcctttat-gcagcttgagaaattatcttctgattttttttttatttttggctttactgtgcag
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g07310.1 (Oryza sativa), 5'ss of exon 4
ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgtt-gagac----tgtttttttatgacagtgctgat-atgtcgatgggcatttgcatgtctacttgattgttataacctggcctgcagtgtctttaactt---------------------------
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ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAGgtttgtatttaatacttcatgtcctttattcagtttgataattatgaagtttgtatttaatacgtcttgtcctttat-gcagcttgagaaattatcttctgattttttttttatttttggctttactgtgcag
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G081848_T01 (Zea mays), 5'ss of exon 4
ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgttgagactgtttttttatgacagtgctgatatgtcgatgggcatttgcatgtctacttgattgttataacctggcctgcagtgtctttaactt
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ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtt--tgtttgtaatacgtcat-------gtgctt-tatggagctctataatataccatctaatctttttcactgacctactgtgcag------------
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G081848_T05 (Zea mays), 5'ss of exon 4
ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgttgagactgt----ttttttatgacagtgc-tgatatgtcga-tgggcatttgcat--gtctacttgattgttataacctggcctgcagtgtctttaactt
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ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgtaatacgtcatgtgctttatggagctctataatataccatctaatctttttcactgacctactgtgcagtcggaacat--caagctttccctt------
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G116053_T01 (Zea mays), 5'ss of exon 4
ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgttgagactgtttttttatgacagtgctgatatgtcgatgggcatttgcatgtctacttgattgttataacctggcctgcagtgtctttaactt
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ATGACAAAGCTGGCCATAATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCCGGAAGAAATTTAGgtttgc-ttgcaatacatcatgtgctata-tgcaggtctatagtataccatcta---atctttttcaccgacat----tgctgtgcag------------
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G063253_T03 (Zea mays), 5'ss of exon 3
--------------------------------ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgtt-gagactgtttttttatgacagtgctgatatgt-cgatgggcatttgcatgtct--acttgattgttataacctggcctgcagtgtctttaactt
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CCTAACTGATGCTGAAATGCCTTTAAATTTAGATGACTAAGCTGGCAATCATCCCGTGCACTGTCATTTTAGAGACACTTTTCTTCAGGAAGAAGTTCAGgtttgtgtttgatacattttgtgcattatttccgtaatatcttcagctaacattttcttttatgaaactcatcgc-ataacatgtttcttactttactctgcag
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G063253_T09 (Zea mays), 5'ss of exon 3
ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgtt-gagactgtttttttatgacagtgctgatatgt-cgatgggcatttgcatgtct--acttgattgttataacctggcctgcagtgtctttaactt
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ATGACTAAGCTGGCAATCATCCCGTGCACTGTCATTTTAGAGACACTTTTCTTCAGGAAGAAGTTCAGgtttgtgtttgatacattttgtgcattatttccgtaatatcttcagctaacattttcttttatgaaactcatcgc-ataacatgtttcttactttactctgcag
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G063511_T02 (Zea mays), 5'ss of exon 4
ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgtt-gagactgtttttttatgacagtgctgatatgtcgatgggcatttgcatgtctacttgattgttataacctggcctgcagtgtctttaactt---
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ATGACTAAGCTGGCGATCATCCCGTGCACTGTCATCTTAGAGACACTTTTCTTCAGGAAGAAGTTCAGgtttgtgtttgatacattttgtgcatcttttccatgatatcttcagctaagatctcctttttg---gaaactcatcagctaacatgtttcttacttcaccgcag
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G063511_T03 (Zea mays), 5'ss of exon 1
--------------------------------ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgtt-gagactgtttttttatgacagtgctgatatgtcgatgggcatttgcatgtctacttgattgttataacctggcctgcagtgtctttaactt---
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CCTAACTGATGCTGAAATGCCTTTATATCTAGATGACTAAGCTGGCGATCATCCCGTGCACTGTCATCTTAGAGACACTTTTCTTCAGGAAGAAGTTCAGgtttgtgtttgatacattttgtgcatcttttccatgatatcttcagctaagatctcctttttg---gaaactcatcagctaacatgtttcttacttcaccgcag
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G39920.1 (Glycine max), 5'ss of exon 4
ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgttgagactgtttttttatgacagtgctgatatgtcgatgggcatttgcatgtctacttgattgttataacctggcctgcagtgtctttaactt-----
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ATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATTTTTCTTGGGAAGAGATTCAGgttc-tatttagctt--cttatgaatacactgtttttatgtt--tgggtgttgatatatacttgaaatgataattatgtaacagtcactttttgttttttttctt
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G14970.2 (Glycine max), 5'ss of exon 4
ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgttgagactgtttttttatgacagtgctgatatgtcgatgggcatttgcatgtctacttg--attgttataacctggcctgcagtgtctttaactt-
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ATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATATTTCTTGGGAAGAGATTCAGgttc-catttag-cttcttatgaatactatgatttttttaatgttcgggtgttg-atatatacttgaaatgataattatgtaacggtcactttttgttttttt
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G06890.2 (Arabidopsis thaliana), 5'ss of exon 4
ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgttgagactgtttttttatgaca-gtgctgatatgtcgatg-ggcatttgcatgtctacttgattgttataacctggcctgcagtgtctttaactt-
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ATGACTAAACTAGCTATCATCCCCTGCACTGTTCTCTTGGAGACCCTCTTCTTCAGGAAAAAGTTCAGgttagcactcaaattctcttccattaacacgtgaataattattgatttggaggaagctgttttacatgacatctatatttt---tcttatggtcatgcatttc
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G30460.1 (Arabidopsis thaliana), 5'ss of exon 5
ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgttgagactgtttttttatgacagtgctgatatgtcgatgggcatttgcatgtctacttgattgttataacctggcctgcagt--gtctttaactt--
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ATGACAAAACTTGCAATCATCCCCTGTACTGTTGTCTTAGAGACCATCTTCTTCAGAAAGATGTTCAGgttagcactgatattgtctaagtaata---tgtcttttttccattacatgtatg-atgttggtactcttggagatagctgtattaggattggtttagaaattgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110370848|gb|EC934415.1|EC934415EST: ATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAG TAGGAGTATCCAGCTTGCTCTTTCTATCCTTCTTATGGGTGTCGGAATTGC
genomic: ATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgttg ... attgttgcagTAGGAGTATCCAGCTTGCTCTTTCTATCCTTCTTATGGGTGTCGGAATTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGACAAAGCTGGCAATCATTCCCTGTACTGTACTCTTGGAGACCCTTTTCTTCAGGAAGAAATTCAGgttaatgttgagactgtttttttatgacagtgctgatatgtcgatgggcatttgcatgtctacttgattgttataacctggcctgcagtgtctttaactt
- - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA