1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTGTAATATATCAGAAGCCTGTCTCATCTTCCTGCTATGAGAAACGCAAAGAAAATAATCCACCAATGTGTGATATAAAAGATAAGAAAAACATTTCATGgtactcttcaggaacctgtagccttattcccaaattgttgttgttattatagctgctgcctctaatgtcatccatttttgtattttag
species | Vitis vinifera |
transcript | Vv13s0067g01690.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAAAATAATCCACCAATGTGTGATATAAAAGATAAGAAAAACATTTCATG GTACGTGCCTCTTGACGGTTGTATTCCCCAACTCCCAGCAGATAGCATGGGEST: gi|110691233|gb|EE069103.1|EE069103
genomic: GAAAATAATCCACCAATGTGTGATATAAAAGATAAGAAAAACATTTCATGgtactcttca ... tgtattttagGTATGTGCCTCTTGACGGTTGTATTCCCCAACTCCCAGCAGATAGCATGGG
EST: GAAAATAATCCACCAATGTGTGATATAAAAGATAAGAAAAACATTTCATG GTACGTGCCTCTTGACGGTTGTATTCCCCAACTCCCAGCAGATAGCATGGGEST: gi|30255679|gb|CB971811.1|CB971811
genomic: GAAAATAATCCACCAATGTGTGATATAAAAGATAAGAAAAACATTTCATGgtactcttca ... tgtattttagGTATGTGCCTCTTGACGGTTGTATTCCCCAACTCCCAGCAGATAGCATGGG
EST: GAAAATAATCCACCAATGTGTGATATAAAAGATAAGAAAAACATTTCATG GTATGTGCCTCTTGACGGTTGTATTCCCCAACTCCCAGCAGATAGCATGGG
genomic: GAAAATAATCCACCAATGTGTGATATAAAAGATAAGAAAAACATTTCATGgtactcttca ... tgtattttagGTATGTGCCTCTTGACGGTTGTATTCCCCAACTCCCAGCAGATAGCATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTAATATATCAGAAGCCTGTCTCATCTTCCTGCTATGAGAAACGCAAAGAAAATAATCCACCAATGTGTGATATAAAAGATAAGAAAAACATTTCATGgtactcttcaggaacctgtagccttattcccaaattgttgttgttattatagctgctgcctctaatgtcatccatttttgtattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA