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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTCATTCCACAACTACAGGCTTTGGTCTTTTCTTGGTCTTGGTATGACCACTTACACTGCCTGGTATTTGACCATTGCAGCCCTGGTTCAAGGCCAGgtattcttcattttttctttctgggtttttcactccttacaatcatccttcactggataaacgaatcactttccttttatcttttgtaatctcaacggaaagccattgactttggatggtttttactgttttacag

Basic information

species Vitis vinifera
transcript Vv13s0067g00330.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g00330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G03280.1 (Glycine max), 5'ss of exon 5
TCCTTCATTCCACAACTACAGGCTTTGGTCTTTTCTTGGTCTTGGTATGACCACTTACACTGCCTGGTATTTGACCATTGCAGCCCTGGTTCAAGGCCAGgtattcttcatt--ttttctttctgggtttttcactccttacaatcatccttcactggataaacgaatcactttccttttatcttttgtaatctcaacggaaagccattgactttggatggtttttactgttttacag
||| |||||||||||||||||| | ||||| || ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||  |   |        |||  | | |||||| |||          ||  ||  | || ||  |  |||  |    ||| | ||    || ||      |||   | | | |||| |                    
TCCATCATTCCACAACTACAGGATATGGTCCTTCCTTGGTCTTGGCATGACCACCTACACTGCATGGTATTTGACCATTGCAGCCCTTGTTCATGGCCAGgtaagcaaaaccaacaaccttaattgttttttctctctggtggggtttctctcctttga-aattgtttcaactaaactttgt-ttaaaaaaccttgttttaaaaaaaattaatttgtag-------------------

upper sequence: Vv13s0067g00330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G35080.1 (Glycine max), 5'ss of exon 5
TCCTTCATTCCACAACTACAGGCTTTGGTCTTTTCTTGGTCTTGGTATGACCACTTACACTGCCTGGTATTTGACCATTGCAGCCCTGGTTCAAGGCCAGgtattcttcattttttctttctgggtttttcactccttacaatcatccttcactggataaacgaatcactttccttttatcttttgtaatctcaacggaaagccattgactttggatggtttttactgttttacag
 || |||||||||||||||||| | ||||| || ||||||||||| |||||||| |||||||| ||||||||||||||||||||| | | ||| |||||||||  |                        ||  | |   |||  |  ||  ||   |    |  |  ||  ||||| |  ||      | |||||  |||     | |      |   |||| |    |||| ||
CCCATCATTCCACAACTACAGGATATGGTCCTTCCTTGGTCTTGGCATGACCACCTACACTGCTTGGTATTTGACCATTGCAGCCATTGCTCATGGCCAGgtaagc----------------aaaaccaacaacctt---aattgtttttttctctctggtggggtttctcccctttgaaatt-----gtttcaact-aaacttgcttaaaaaaaacttttttcatcaatttatag

upper sequence: Vv13s0067g00330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G06600.1 (Glycine max), 5'ss of exon 4
TCCTTCATTCCACAACTACAGGCTTTGGTCTTTTCTTGGTCTTGGTATGACCACTTACACTGCCTGGTATTTGACCATTGCAGCCCTGGTTCAAGGCCAGgtattcttcattttttctttctgggtttttcactccttacaatcatccttcactggataaacgaatcactttccttttatcttttgtaatctc--------aacggaaagccattgac----tttggatggtttttactgttttacag
 |||||||| |||||||||||  |||||||||| ||||| ||||| |||||||||||||| || |||||  |||||||||||||| | | ||| |||||||||  |         |      |  ||| |  || |         ||  | | | || |  ||  | | |||  |  ||  | || |||  |         ||   |||  ||||  |    | |   ||   | |    |||| |||
ACCTTCATTTCACAACTACAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatgccaagtacaatggtctttatttcttcagtggggtctctcttatttga-agtcgtttgattttgatcataa-tattataacttagtgtaaaaaaaaaaaaaacattatcacggtgtcactgagctgtttaattttgcag

upper sequence: Vv13s0067g00330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G42290.1 (Glycine max), 5'ss of exon 4
TCCTTCATTCCACAACTACAGGCTTTGGTCTTTTCTTGGTCTTGGTATGACCACTTACACTGCCTGGTATTTGACCATTGCAGCCCTGGTTCAAGGCCAGgtattcttcattttttctttctgggtttttcactccttacaatcatccttcactggataaacgaatcactttccttttatcttttgtaatctcaacggaaagccattgactttggatggtttttactgttttacag
 |||||||| |||||||| ||  |||||||||| ||||| ||||| |||||||||||||| || |||||  |||||||||||||| | | ||| |||||||||  |   | |      | |   | |  | | | ||| || |      ||  |   | ||    ||  |||  ||| ||| |     |    | |  |  | || || || |   |   |||| | |        
ACCTTCATTTCACAACTATAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagc---aatgccaagtacaacggtcgttatttctt-cagtggggtctctttatttgaa---gtcg-tttgatttgatcat--aatacactatcacagtgtcactggctat---ttaattttgcag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407777|gb|CF213404.1|CF213404
EST:     CACTTACACTGCCTGGTATTTGACCATTGCACG-ACTGGTTCAAGGCCAG                         GTTGGAAATGTGAAGCACACAGGCCCTACTAAGCTGGTCCTGTATTTCACT
genomic: CACTTACACTGCCTGGTATTTGACCATTGCA-GCCCTGGTTCAAGGCCAGgtattcttca ... tgttttacagGTTGAAAATGTGAAGCACACAGGCCCTACTAAGCTGGTCCTGTATTTCACT
EST: gi|110402117|gb|EC968752.1|EC968752
EST:     CCACTTACACTGCCTGGTATTTGACCATTGCAGCCCTGGTTCAAGGCCAG                         GTTGAAAATGTGAAGCACACAGGCCCTACTAAGCTGGTCCTGTATTTCACT
genomic: CCACTTACACTGCCTGGTATTTGACCATTGCAGCCCTGGTTCAAGGCCAGgtattcttca ... tgttttacagGTTGAAAATGTGAAGCACACAGGCCCTACTAAGCTGGTCCTGTATTTCACT