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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAGgtataatagaaaaactacatttgaatcaaacacacatgatcctccaaccaactctgatcctgatctctccccaaacttttttttttctttttcttgcag

Basic information

species Vitis vinifera
transcript Vv13s0064g01290.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g01290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os08g39630.1 (Oryza sativa), 5'ss of exon 5
CAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAGgtataatagaaaaactaca-tttgaatcaaacacacatgatcctccaaccaactctgatcctgatctctc-cccaaacttttttttttctttttcttgcag
||||| ||||| || || ||||| |||||||| || || |||||||| || |||||||| |||||||||||| |   ||  | ||| | | |   |   |  | |   ||     |     |  |     | |||| |  |    | ||   ||  ||    | |    |
CAAACCAACACTGCTGACATGCTGGATTTGGCTGTTGACTACATCAAGGATCTTCAGAAGCAGGTCAAGgta-agctgattagctataatctcccttttaatcccgcaattaattagaacgccatctatatcatctgtagcttgtaattagattagtcaacctatcctgg

upper sequence: Vv13s0064g01290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G417597_T02 (Zea mays), 5'ss of exon 2
CAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAGgtataatagaaaaactacatttgaatcaaacacacatgatcctccaaccaactctgatcctgatctctccccaaacttttttttttcttt-ttcttgcag---------
||||| ||||| || || ||||| ||| |||| || || |||||||| || |||||||| ||||||||||||||         | ||||   || |   ||||     | || |    | | ||| |    |  |     ||   ||   ||   ||||  |   | ||         
CAAACCAACACTGCCGACATGCTGGATCTGGCTGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAGgtatat------gcccacatccaaaac---cacattcttttctgccgagaccgctggtaggaacttgaatacacgattgagttaagctttactaaggtagtggtaggtt

upper sequence: Vv13s0064g01290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G36750.1 (Glycine max), 5'ss of exon 6
CAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAGgta-taataga---aaaactacatttgaatcaaacacacatgatcctccaaccaactctgatcctgatctctccccaaacttttttttttctttttcttgcag
||||||| ||| ||||||||| | ||||||||||| || ||||| |||||||| |||||||| || |||||| | | | |   ||  || |   | ||||    | |||  ||    |  |||     |    || | |||| |||||    |  |||| ||  ||||||||
CAAACAAGCACTGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTGCAGAAACAAGTTAAGgtactgagaaatataagtcttcccataaatcctgaaaacaaaatttagcctccactatagtctatgttgtctcaccaaa----taattttgttcatcttgcag

upper sequence: Vv13s0064g01290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G27460.1 (Glycine max), 5'ss of exon 4
CAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAGgtataatagaaaaactacatttgaatcaaacacacatgatcctccaaccaactctgatcctgatct---ctccccaaacttttttttttctttttcttgcag
||||||| ||| ||||||||| | ||||||||||| || ||||| |||||| | |||||||| || ||||||  | ||||| |  |   ||   ||| | |  ||  |      || || |    |   |  |||    |  |  | |   |  ||||  |  ||||||||
CAAACAAGCACTGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACTTGCAGAAACAAGTTAAGgtactagagaaatataagtcttc--tcataaatccaaaaaaaaaaaatcagcctccactatagtctatattgtctgaccaaataattttgctcatcttgcag

upper sequence: Vv13s0064g01290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G16190.1 (Glycine max), 5'ss of exon 6
CAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAGgtataatagaaaaactacatttgaatcaaacac---acatgatcctc-caaccaactctgatcctgatctctccccaaacttttttttttctttttcttgcag
||||||| ||||||||||||| ||||||||||||| || || || || ||||| ||| || | || ||||||  | ||||  |  |   ||     |||  |   | |  ||   | ||   |||||       | | |     | ||||   ||| ||  |  || |||||
CAAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGAGTATATTAAGGACCTGCAGCAAAAAGTTAAGgtactagagaagtataaatctttccataaattctgaaaagaatatacacattaaactccaccaaagttatagtgtctaactaaatttatttctcctcgtgcag

upper sequence: Vv13s0064g01290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G42680.1 (Glycine max), 5'ss of exon 6
CAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAGgtataatagaaaaactacatttgaatcaaacac---acatgatcctccaaccaactctgatcctgatc-tctccccaaacttttttttttctttttcttgcag
| ||||| ||||||||||||| ||||||||||||| ||  |||| || ||||| ||  |||| ||  ||||| || ||||  |  |   ||     ||   |   | |  ||   |  |  ||     | |    || | |   | ||||   ||| ||     || |||||
CCAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGAGCACATTAAGGACCTGCAACAACAAGTTCAGgtacaagagaagtataaatcttcccataatttctgaagagaataaacgcattaaactccaccaaagtcatatagtctaactaaatttctttcacctcatgcag