Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGTGGTTGTTAAAGTTCATGACTCGTGGGCAGAATTTCGGGAATATTTCAGACAACAGgtttttccttatcttcaataatggattctgaaagcccacctagcgctttcccttaaattctatatgttctctccttttggtgcag

Basic information

species Vitis vinifera
transcript Vv13s0064g01270.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351022623|gb|FQ447145.1|FQ447145
EST:     TTAAAGTTCATGACTCGTGGGCAGAATTTCGGGAATATTTCAGACAACAG                         GAAGGAGAAAAGCGGTTGTTGGCATTTACCAAGAGAGGAACAAACATTCAT
genomic: TTAAAGTTCATGACTCGTGGGCAGAATTTCGGGAATATTTCAGACAACAGgtttttcctt ... tttggtgcagGAAGGAGAAAAGCGGTTGTTGGCATTTACCAAGAGAGGAACAAACATTCAT
EST: gi|26257252|gb|CA808315.1|CA808315
EST:     TTAAAGTTCATGACTCGTGGGCAGAATTTCGGGAATATTTCAGACAACAG                         GAAGGAGAAAAGCGGTTGTTGGCATTTACCAAGAGAGGAACAAACATTCAT
genomic: TTAAAGTTCATGACTCGTGGGCAGAATTTCGGGAATATTTCAGACAACAGgtttttcctt ... tttggtgcagGAAGGAGAAAAGCGGTTGTTGGCATTTACCAAGAGAGGAACAAACATTCAT
EST: gi|351015543|gb|FQ447372.1|FQ447372
EST:     TTAAAGTTCATGACTCGTGGGCAGAATTTCGGGAATATTTCAGACAACAG                         GAAGGAGAAAAGCGGTTGTTGGCATTTACCAAGAGAGGAACAAACATTCAT
genomic: TTAAAGTTCATGACTCGTGGGCAGAATTTCGGGAATATTTCAGACAACAGgtttttcctt ... tttggtgcagGAAGGAGAAAAGCGGTTGTTGGCATTTACCAAGAGAGGAACAAACATTCAT
EST: gi|349825487|gb|FQ419404.1|FQ419404
EST:     TTAAAGTTCATGACTCGTGGGCAGAATTTCGGGAATATTTCAGACAACAG                         GAAGGAGAAAAGCGGTTGTTGGCATTTACCAAGAGAGGAACAAACATTCAT
genomic: TTAAAGTTCATGACTCGTGGGCAGAATTTCGGGAATATTTCAGACAACAGgtttttcctt ... tttggtgcagGAAGGAGAAAAGCGGTTGTTGGCATTTACCAAGAGAGGAACAAACATTCAT
EST: gi|349831115|gb|FQ420785.1|FQ420785
EST:     TTAAAGTTCATGACTCGTGGGCAGAATTTCGGGAATATTTCAGACAACAG                         GAAGGAGAAAAGCGGTTGTTGGCATTTACCAAGAGAGGAACAAACATTCAT
genomic: TTAAAGTTCATGACTCGTGGGCAGAATTTCGGGAATATTTCAGACAACAGgtttttcctt ... tttggtgcagGAAGGAGAAAAGCGGTTGTTGGCATTTACCAAGAGAGGAACAAACATTCAT
EST: gi|26257522|gb|CA808585.1|CA808585
EST:     TTAAAGTTCATGACTCGTGGGCAGAATTTCGGGAATATTTCAGACAACAG                         GAAGGAGAAAAGCGGTTGTTGGCATTTACCAAGAGAGGAACAAACATTCAT
genomic: TTAAAGTTCATGACTCGTGGGCAGAATTTCGGGAATATTTCAGACAACAGgtttttcctt ... tttggtgcagGAAGGAGAAAAGCGGTTGTTGGCATTTACCAAGAGAGGAACAAACATTCAT
EST: gi|349825184|gb|FQ415731.1|FQ415731
EST:     TTAAAGTTCATGACTCGTGGGCAGAATTTCGGGAATATTTCAGACAACAG                         GAAGGAGAAAAGCGGTTGTTGGCATTTACCAAGAGAGGAACAAACATTCAT
genomic: TTAAAGTTCATGACTCGTGGGCAGAATTTCGGGAATATTTCAGACAACAGgtttttcctt ... tttggtgcagGAAGGAGAAAAGCGGTTGTTGGCATTTACCAAGAGAGGAACAAACATTCAT