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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTAAGATCACTTGGTGCTCCGGCTGTTCTTCTCTCTTTAGCCATGCAAGGAGTTTTTCGGGGTTTTAAGGATACAAAAACTCCTTTATACGCCACTGgtgagcaatagcttttggttacctttttccttttcctcctcattcgcattattcttcaacattttttaaaccttggtccgattacttgtagccaattcagctaatttactctatttcatttgcaatttttggtctaccatag

Basic information

species Vitis vinifera
transcript Vv13s0064g00930.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00930.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM5G870170_T02 (Zea mays), 5'ss of exon 5
ACATTAAGATCACTTGGTGCTCCGGCTGTTCTTCTCTCTTTAGCCATGCAAGGAGTTTTTCGGGGTTTTAAGGATACAAAAACTCCTTTATACGCCACTGgtg-agcaatagctt-ttggttacctttttccttttcctcctcattcgcatt--attcttcaacattttttaaaccttggtccgattacttgtagccaattcagctaatttactctatttcatttgcaatttttggtctaccatag
    | ||||| ||||||||||| ||||||||  | ||| | || || |||||||| ||||| || |||||||||||||| || ||| ||||||| ||||||  |  ||||  |  ||  |||  |  |   |  |          |  |||  |||||  || |  | ||  || |   ||  || |          | ||||||                                        
GTTCTCAGATCTCTTGGTGCTCCTGCTGTTCTGTTATCTCTGGCAATACAAGGAGTCTTTCGCGGATTTAAGGATACAAAGACGCCTCTATACGCAACTGgtataataatatttcatttcttagatagtaaatgatatatacttggcaaattgaattctaaaagaaatcttcgacttcactctcatcat--------gactcagcttt--------------------------------------

upper sequence: Vv13s0064g00930.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G36610.1 (Glycine max), 5'ss of exon 5
ACATTAAGATCACTTGGTGCTCCGGCTGTTCTTCTCTCTTTAGCCATGCAAGGAGTTTTTCGGGGTTTTAAGGATACAAAAACTCCTTTATACGCCACTGgtgagcaatagcttttggttacctttttccttttcctcctcattcgcattattcttcaacattttttaaaccttggtccgatt-acttgtagccaattcagctaatttactctatttcatttgcaatttttggtctaccatag
| ||| |||||| ||||  | || |||||||||||||| || |||||||||||| | ||||| || || ||||| |||| |||||||||||| |  |  ||| ||       ||    ||   || |     |      | ||    | |  | |   |||  ||      |   |||  ||| |     |    |||    |||                                      
AGATTGAGATCAATTGGGTCACCTGCTGTTCTTCTCTCCTTGGCCATGCAAGGAATCTTTCGAGGGTTCAAGGACACAACAACTCCTTTATATGTGATCGgtaag-------ttcaaattcatttgtatgagtaatgatttatgaatacttatatgtgacaaattgagtcacccagtctaatttagactcattggattggattaaaa------------------------------------

upper sequence: Vv13s0064g00930.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G27300.1 (Glycine max), 5'ss of exon 6
ACATTAAGATCACTTGGTGCTCCGGCTGTTCTTCTCTCTTTAGCCATGCAAGGAGTTTTTCGGGGTTTTAAGGATACAAAAACTCCTTTATACGCCACTGgtgagcaatagcttttggttacctttttccttttcctcctcattcgcattattcttcaacattttttaaaccttggtccgattacttgtagccaattcagctaatttactctatttcatttgcaatttttggtctaccatag
| ||| |||||  | || || || || || |||||||| || |||||||||||  | ||||| || || |||||||||| |||||||||||| | ||  |||  |       ||    ||| |  |||  || |  |    |     ||| ||     | |   | ||||     |   | || |   ||   || |  | | ||||  |   ||   |||   || |              
AGATTGAGATCGTTCGGGGCACCAGCAGTACTTCTCTCCTTGGCCATGCAAGGCATCTTTCGAGGGTTCAAGGATACAACAACTCCTTTATATGTCATCGgttgg-------ttcaaattatccatttgtttataatg---aagtatatt-ttgagagataaagtgtaaattaaagcatgttttccctta-ttaacttggtttatttgtttctttggttttattatatag------------

upper sequence: Vv13s0064g00930.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G43020.1 (Glycine max), 5'ss of exon 6
ACATTAAGATCACTTGGTGCTCCGGCTGTTCTTCTCTCTTTAGCCATGCAAGGAGTTTTTCGGGGTTTTAAGGATACAAAAACTCCTTTATACGCCACTGgtgagcaatagcttttggttacctttttccttttcctcctcattcgcattattcttcaacattttttaaaccttggtccgattacttgtagccaattcagctaatttactctatttcatttgcaatttttggtctaccatag
| ||| |||||| | |||||||| || || |||||||| || |||||||||||| | ||||| || || ||||| || | |||||||||||| |  | | ||  |    |    |   ||  | |       |    ||| | | |    |   |   | |   |  |||     ||   |  |      || | |  |   ||||||                                  
AGATTGAGATCATTAGGTGCTCCTGCAGTGCTTCTCTCCTTGGCCATGCAAGGAATCTTTCGAGGATTCAAGGACACTACAACTCCTTTATATGTTATTCgtaggttcaaatgatccattgtcatgaaa---taaagcctaaatagagacaaagtgtgaaagaatgaaaatgcatgttaaagcat-----gctagtcaaataaattta----------------------------------