1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCGAGCAACAGGAGATGCTGATTCAGCAGTCACATATTTTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAGgttactgcttcataaccattaaggcatatcctatacatttttggataaatgtggccctaattgttttgaaccttttttccccttaatttctctacag
species | Vitis vinifera |
transcript | Vv13s0047g00170.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAG ATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATATEST: gi|28964625|gb|CB343658.1|CB343658
genomic: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAGgttactgctt ... ttctctacagATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATAT
EST: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAG ATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATATEST: gi|29782979|gb|CB348769.2|CB348769
genomic: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAGgttactgctt ... ttctctacagATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATAT
EST: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAG ATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATATEST: gi|351038304|gb|FQ460996.1|FQ460996
genomic: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAGgttactgctt ... ttctctacagATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATAT
EST: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAG ATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATATEST: gi|110362765|gb|EC926319.1|EC926319
genomic: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAGgttactgctt ... ttctctacagATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATAT
EST: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAG ATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATATEST: gi|110386747|gb|EC951369.1|EC951369
genomic: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAGgttactgctt ... ttctctacagATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATAT
EST: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAG ATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATATEST: gi|351055326|gb|FQ441924.1|FQ441924
genomic: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAGgttactgctt ... ttctctacagATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATAT
EST: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAG ATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATATEST: gi|110363678|gb|EC927285.1|EC927285
genomic: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAGgttactgctt ... ttctctacagATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATAT
EST: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAG ATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATATEST: gi|351038515|gb|FQ464381.1|FQ464381
genomic: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAGgttactgctt ... ttctctacagATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATAT
EST: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAG ATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCANATAT
genomic: TTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAGgttactgctt ... ttctctacagATCACACATACCCTTTCTGTCTCACTCAATAAAATTGGAGATCTCAAATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGAGCAACAGGAGATGCTGATTCAGCAGTCACATATTTTGAAGAGAGTGTTGATTTCCTCAGAAAATTGCCAGCAGATGATCTGGAGgttactgcttcataaccattaaggcatatcctatacatttttggataaatgtggccctaattgttttgaaccttttttccccttaatttctctacag
- - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG