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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAACTGCCTATTGGGAGTCAGCAGCTCTCAGAAGCATATGGTGACAGTGGTGCATCCTCTTCAAAGAAAAATCCCGAGGCTACAGAATTTGAATCCGgtaagtataaaaactgtattttagttcaatctagcatcactagatagaattttaaagttgatatgtaatcttacttcaaatccttgtttatttgcaagctaatccttttctttcacttgtattgacctgagcattatctttatgcactgtatttgtggtgcag

Basic information

species Vitis vinifera
transcript Vv13s0019g05240.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30125446|gb|CB910785.1|CB910785
EST:     TGGTGCATCCTCTTCAAAGAAAAATCCCAAGGCTACAGAATTTGAATCCG                         ATATCCCATATCCATTCATCAAACAGGCAAGCTATCAGTTGTTGGGTGGTA
genomic: TGGTGCATCCTCTTCAAAGAAAAATCCCGAGGCTACAGAATTTGAATCCGgtaagtataa ... tgtggtgcagATATCCCATATCCATTCATCAAACAGGCAAGCTATCAGTTGTTGGGTGGTA
EST: gi|110724243|gb|EE099899.1|EE099899
EST:     TGGTGCATCCTCTTCAAAGAAAAATCCCAAGGCTACAGAATTTGAATCCG                         ATATCCCATATCCATTCATCAAACAGGCAAGCTATCAGTTGTTGGGTGGTA
genomic: TGGTGCATCCTCTTCAAAGAAAAATCCCGAGGCTACAGAATTTGAATCCGgtaagtataa ... tgtggtgcagATATCCCATATCCATTCATCAAACAGGCAAGCTATCAGTTGTTGGGTGGTA
EST: gi|30302761|gb|CB979555.1|CB979555
EST:     TCAAAGAAAAATCCCAAGGCTACAGAATTTGAATCCG                         ATATCCCATATCCATTCATCAAACAGGCAAGCTATCAGTTGTTGGGTGGTA
genomic: TCAAAGAAAAATCCCGAGGCTACAGAATTTGAATCCGgtaagtataa ... tgtggtgcagATATCCCATATCCATTCATCAAACAGGCAAGCTATCAGTTGTTGGGTGGTA
EST: gi|110700080|gb|EE077708.1|EE077708
EST:     TGGTGCATCCTCTTCAAAGAAAAATCCCAAGGCTACAGAATTTGAATCCG                         ATATCCCATATCCATTCATCAAACAAGCAAGCTATCAGTTGTTGGGTGGTA
genomic: TGGTGCATCCTCTTCAAAGAAAAATCCCGAGGCTACAGAATTTGAATCCGgtaagtataa ... tgtggtgcagATATCCCATATCCATTCATCAAACAGGCAAGCTATCAGTTGTTGGGTGGTA
EST: gi|110716386|gb|EE091320.1|EE091320
EST:     AAAAATCCCAAGGCTACAGAATTTGAATCCG                         ATATCCCATATCCATTCATCAAACAGGCAAGCTATCAGTTGTTGGGTGGTA
genomic: AAAAATCCCGAGGCTACAGAATTTGAATCCGgtaagtataa ... tgtggtgcagATATCCCATATCCATTCATCAAACAGGCAAGCTATCAGTTGTTGGGTGGTA
EST: gi|110363943|gb|EC927578.1|EC927578
EST:     TGGTGCATCCTCTTCAAAGAAAAATCCCAAGGCTACAGAATTTGAATCCG                         ATATCCCATATCCATTCATCAAACAGGCAAGCTATCAGTTGTTGGGTGGTA
genomic: TGGTGCATCCTCTTCAAAGAAAAATCCCGAGGCTACAGAATTTGAATCCGgtaagtataa ... tgtggtgcagATATCCCATATCCATTCATCAAACAGGCAAGCTATCAGTTGTTGGGTGGTA
EST: gi|34550565|gb|CF518783.1|CF518783
EST:     TGGTGCATCCTCTTCAAAGAAAAATCCCAAGGCTACAGAATTTGAATCCG                         ATATCCCATATCCATTCATCAAACAGGCAAGCTATCAGTTGTTGGGTGGTA
genomic: TGGTGCATCCTCTTCAAAGAAAAATCCCGAGGCTACAGAATTTGAATCCGgtaagtataa ... tgtggtgcagATATCCCATATCCATTCATCAAACAGGCAAGCTATCAGTTGTTGGGTGGTA
EST: gi|110366982|gb|EC930902.1|EC930902
EST:     TGGTGCATCCTCTTCAAAGAAAAATCCCAAGGCTACAGAATTTGAATCCG                         ATATCCCATATCCATTCATCAAACAGGCAAGCTATCAGTTGTTGGGTGGTA
genomic: TGGTGCATCCTCTTCAAAGAAAAATCCCGAGGCTACAGAATTTGAATCCGgtaagtataa ... tgtggtgcagATATCCCATATCCATTCATCAAACAGGCAAGCTATCAGTTGTTGGGTGGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGAAACTGCCTATTGGGAGTCAGCAGCTCTCAGAAGCATATGGTGACAGTGGTGCATCCTCTTCAAAGAAAAATCCCGAGGCTACAGAATTTGAATCCGgtaagtataaaaactgtattttagttcaatctagcatcactagatagaattttaaagttgatatgtaatcttacttcaaatccttgtttatttgcaagctaatccttttctttcacttgtattgacctgagcattatctttatgcactgtatttgtggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA