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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGCTGGCACCACTTTACTATCGAGGTGCTGCAGTTGCAGTTGTAGTGTATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatctttttttagtaggaagtgcaatagtatttatttctgtttctttcttgcttaattatttctatttctttgcttgcttcatttatttatttcttttt...

Basic information

species Vitis vinifera
transcript Vv13s0019g04680.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04680.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g05740.1 (Oryza sativa), 5'ss of exon 5
TGCGCTGGCACCACTTTACTATCGAGGTGCTGCAGTTGCAGTTGTAGTGTATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatctttttttagtaggaagtgcaatagt-atttatttctgtttctttcttgcttaattatttctatttctttgcttgcttcatttatttatttcttttt-
|||  ||||||| ||||||||  |||| ||||| | ||||||||| || || || ||||| || ||||||||||| | ||||||||| || ||||| |||||||  | |      |  |  |||  |  | || | |   || ||  ||  |  ||   ||| | |   | |  | |||  |  |||        || ||  
TGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGTTGTCTACGACATAACTAGTCCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGgtatgctatcgccaaattatctgcttttctgatgtctggttgattgattactcttt--ctatcttttactatgagtttgtattttttgcccgaaactgttct

upper sequence: Vv13s0019g04680.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G362088_T02 (Zea mays), 5'ss of exon 6
TGCGCTGGCACCACTTTACTATCGAGGTGCTGCAGTTGCAGTTGTAGTGTATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatctttttttagtaggaagtgcaatagtattt--atttctgtttctttcttgcttaattatttctatttctttgcttgcttcatttatttatttcttttt-----
|||  |||| |||||||||||  |||| ||||| | |||| |||| || |||||||||||||| || |||||||| | |||||||||||||||||| ||||||   |       || | |   |  || | ||   | ||||  | |||  ||   |    ||| |   || |   | || | ||| |  ||    || |       
TGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGTTGTCTATGATATAACAAGTCCGGAATCATTTAGCAAAGCACAGTATTGGGTAAAGgtaaagt------ataagcaaccctctactcttctgagttcttatccttggttttctccccattccctattatcgacctg-tgcatcttcttgaagctctgatgtaa

upper sequence: Vv13s0019g04680.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G32320.1 (Glycine max), 5'ss of exon 5
TGCGCTGGCACCACTTTACTATCGAGGTGCTGCAGTTGCAGTTGTAGTGTATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt--ttagtaggaagtgcaatagtatttatttctgtttctttcttgcttaattatttctatttctttgcttgcttcatttatttatttcttttt
|||| | |||||||| || || || ||||| |||||||||||| | || ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||  ||||   ||| |     || | ||| | |   ||  |||||  ||  |  ||    ||||  | |  | ||  |     |   |||    | || | 
TGCGTTAGCACCACTCTATTACCGTGGTGCAGCAGTTGCAGTTATTGTTTATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAGgtagattttcagttactgtatggttctatattgtcatttcttgttttgttagttatttgaaattttgaatgatatgaataacaaaaa-attcccctattat-

upper sequence: Vv13s0019g04680.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G35230.3 (Glycine max), 5'ss of exon 5
TGCGCTGGCACCACTTTACTATCGAGGTGCTGCAGTTGCAGTTGTAGTGTATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatctttttttagtaggaagtgcaatagtatttatttctgtttctttcttgcttaattatttctatttct--ttgcttgcttcatttatttatttcttttt---
|||| | ||||| || || || || ||||| |||||||||||| | || ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||  |||     | ||  | || |    | | ||||    ||||||  ||  ||| ||||||  | || |   || |      |   |   ||| |  | |   
TGCGTTAGCACCGCTATATTACCGTGGTGCAGCAGTTGCAGTTATTGTTTATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAGgtagattt-----gcagttattgtatggttctatattgtcatttcttgttttgttagttatttgaaattttgaatgatatgaataacaaacaattcccctatcat

upper sequence: Vv13s0019g04680.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G54840.2 (Arabidopsis thaliana), 5'ss of exon 5
TGCGCTGGCACCACTTTACTATCGAGGTGCTGCAGTTGCAGTTGTAGTGTATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatctttttttag----taggaagtgcaatagtatttatttctgtttctttcttgcttaattattt---ctatttctttgcttgcttcatttatttatttcttttt
||| || |||||||| ||||| || || |||| |||||| ||| | |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||    |     |  | || | ||    || || | | |    ||| |||   |   |     |||| ||||| |  |        |||           
TGCTCTTGCACCACTATACTACCGTGGAGCTGGAGTTGCTGTTATTGTGTATGATATAACAAGCCCTGAATCGTTCAAGAAAGCACAGTATTGGGTTAAGgtatgttttcagggggttcaaaaggttccatttcgttcatgtttctaggattcgtgcaatagcttccgagctatatctttaccaggactgaaaattagag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294963923|gb|GW836798.1|GW836798
EST:     ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAG                         GAATTGAAAAAACATGGAAGCCCTGATATTGTCATGGCTTT
genomic: ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTT
EST: gi|351049141|gb|FQ449863.1|FQ449863
EST:     ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAG                         GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
genomic: ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
EST: gi|351031329|gb|FQ445354.1|FQ445354
EST:     ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAG                         GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
genomic: ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
EST: gi|110378503|gb|EC943640.1|EC943640
EST:     ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAG                         GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
genomic: ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
EST: gi|110386522|gb|EC951122.1|EC951122
EST:     ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAG                         GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
genomic: ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
EST: gi|110707796|gb|EE084605.1|EE084605
EST:     ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAG                         GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
genomic: ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
EST: gi|351029650|gb|FQ427490.1|FQ427490
EST:     ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAG                         GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
genomic: ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
EST: gi|351031354|gb|FQ445379.1|FQ445379
EST:     ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAG                         GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
genomic: ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
EST: gi|351036602|gb|FQ457315.1|FQ457315
EST:     ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAG                         GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
genomic: ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
EST: gi|110390981|gb|EC955931.1|EC955931
EST:     ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAG                         GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
genomic: ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
EST: gi|351033397|gb|FQ462048.1|FQ462048
EST:     ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAG                         GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
genomic: ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
EST: gi|30302011|gb|CB978805.1|CB978805
EST:     ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAG                         GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
genomic: ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
EST: gi|349830843|gb|FQ418151.1|FQ418151
EST:     TGATATAACAAGCCCAGAATCATTCGAACAAAGCACAGTATTGGGTTAAG                         GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
genomic: TGATATAACAAGCCCAGAATCATTC-AACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
EST: gi|110428129|gb|EC994591.1|EC994591
EST:     ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAG                         GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
genomic: ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
EST: gi|351016862|gb|FQ424289.1|FQ424289
EST:     ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAG                         GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
genomic: ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
EST: gi|110691925|gb|EE070587.1|EE070587
EST:     ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAG                         GAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC
genomic: ATGATATAACAAGCCCAGAATCATTCAACAAAGCACAGTATTGGGTTAAGgtatcttttt ... cattttacagGAATTGCAAAAACATGGAAGCCCTGATATTGTCATGGCTTTAGTTGGGAAC