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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGCCACAGTGGATGAAAAGATTAAGATATTCCCTGAGATTATTCCTCATTCTCATACTTTGATGACTGATGTCTTTGGGAATTATGTCATACAGAAAgtatatccaagaaacttaatgagtacgctatttatacattctgaattgttacttaaattgttttacttgcattttcag

Basic information

species Vitis vinifera
transcript Vv13s0019g04640.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04640.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G123537_T02 (Zea mays), 5'ss of exon 4
AACTGCCACAGTGGATGAAAAGATTAAGATATTCCCTGAGATTATTCCTCATTCTCATACTTTGATGACTGATGTCTTTGGGAATTATGTCATACAGAAAgt-----atatccaagaaacttaatgagtacgctatttatacattctgaattgttacttaaattgttttacttgcattttcag------------------------------------------
||||||  |    ||  | |||| || ||| || ||||||||  |||| ||  | | |||||||||||||||||| ||||| || ||||| |||||||| ||     |    ||   |  |||      |     ||| |   ||    |||      |  ||| | | | |   |  ||  |                                          
AACTGCTTCTACTGAACAGAAGAATATGATTTTTCCTGAGATCCTTCCCCAGGCACGTACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAGgtgagaaaccctcatttacattagaacaaatctggtttgttttttaatgatttgcgtattcattttataattgagagcttatgggagctcagtttttaaattagtgattgcttgggttttggcag

upper sequence: Vv13s0019g04640.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G32230.1 (Glycine max), 5'ss of exon 7
AACTGCCACAGTGGATGAAAAGATTAAGATATTCCCTGAGATTATTCCTCATTCTCATACTTTGATGACTGATGTCTTTGGGAATTATGTCATACAGAAAgtatatccaa-----gaaacttaa---tgagtac-gctatttatacattctgaattgttacttaaattgttttact--tgcattttcag---------------
||| ||  |||| || || ||||  |||||||| |||||||| ||||||||| ||| | | |||||||||||||| ||||| |||||||| ||||| ||||||||   |        |||| ||   ||||||| |  ||  |||   |||   || ||   | | |  ||| |    | |||  |                  
AACAGCATCAGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGTGCCTTGATGACTGATGTTTTTGGAAATTATGTTATACAAAAAgtataattagcttgtacaactgaatactgagtactgtcataaatatgctcttttttattgggttattgatttaagaaattcatgcttgacatgctctattgcag

upper sequence: Vv13s0019g04640.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G35290.1 (Glycine max), 5'ss of exon 7
AACTGCCACAGTGGATGAAAAGATTAAGATATTCCCTGAGATTATTCCTCATTCTCATACTTTGATGACTGATGTCTTTGGGAATTATGTCATACAGAAAgtatatccaagaaacttaa-tgagtac--gctatttataca--ttctgaattgttacttaaattgttttacttgcattttcag---------------------
||| ||  | || || || ||||  |||||||| |||||||| ||||||||| ||| | | || ||||||||||| ||||| |||||||| ||||| ||||||||   |    |   || ||| |||    || | | |||  |  |   || ||  ||   |||||    |   | |||||                      
AACGGCATCTGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGTGCCTTAATGACTGATGTTTTTGGCAATTATGTTATACAAAAAgtataattagcttatacaactgaatactgagtactgacacaaatattctcttttttatttggttgttgatttaagaatttcatgcttgacatgctctgttgcag