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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTTCAAATCCCTGGAGCAACAAGCTATATGGGATGCATTGGAAAGGACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttttcacttctttacatcttttgcagcttttccatggttatccatctctccattttagattagttgttttgttactgagacctcttaacaatccatgatcag

Basic information

species Vitis vinifera
transcript Vv13s0019g04480.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g41590.1 (Oryza sativa), 5'ss of exon 5
GATGCTTCAAATCCCTGGAGCAACAAGCTATATGGGATGCATTGGAAAGGACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttttcacttctttacatcttttgcagcttttccatggttatccatct--ctccattttagattag-ttgttttgttactgagac-------ctcttaaca-atccatgatcag
|||||||||||  ||||| |||||||| || ||||| |||||||||||||| |||||||| ||||| |||||||| ||  |  ||  ||||||||||| ||| |||| |   |  ||| |   ||| |  |  ||||| |||||      ||        ||  || | | | ||||    | ||| ||         ||||| ||| |  |  | | ||
GATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGTTGCATTGGAAAGGATAAGTTTGGTGAGGAGATGAAGAAGAATGCCCAAGCTGCTGGTGTTACTgttagttctaa-atctctctctctctctctct-ctttttcatggcatctgatgcaataatatcctacagtggcttgtcaactaactaaggtggtcttgctcttgacacacgctcggttag

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g43750.1 (Oryza sativa), 5'ss of exon 5
GATGCTTCAAATCCCTGGAGCAACAAGCTATATGGGATGCATTGGAAAGGACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttttcacttctttacatcttttgcagcttttccatggttat-ccatctctccattttagattagttgttttgttactgagacctcttaacaatccatgatcag
|||||| || || ||||| |||||||| || ||||| |||||||| ||||||||||| || ||||| ||||||||| || || ||   ||||||||||||| ||||| |     | || |  || ||||  |  | ||||||  |||| ||   || |    ||  |  | |     |  | |   |||||    || |||  | | |||
GATGCTCCAGATTCCTGGTGCAACAAGTTACATGGGTTGCATTGGGAAGGACAAGTTCGGTGAGGAGATGAAGAAAGACGCACAAACCGCTGGTGTTAATgcaagttataa-gttcctctttatgttttaaatttcttccatttttatgcctcttcactcagttgcaccactgcacatactgccttgacctt---accatctttaaacag

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g43750.2 (Oryza sativa), 5'ss of exon 5
GATGCTTCAAATCCCTGGAGCAACAAGCTATATGGGATGCATTGGAAAGGACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttttcacttctttacatcttttgcagcttttccatggttat-ccatctctccattttagattagttgttttgttactgagacctcttaacaatccatgatcag
          || ||||| |||||||| || ||||| |||||||| ||||||||||| || ||||| ||||||||| || || ||   ||||||||||||| ||||| |     | || |  || ||||  |  | ||||||  |||| ||   || |    ||  |  | |     |  | |   |||||    || |||  | | |||
----------ATTCCTGGTGCAACAAGTTACATGGGTTGCATTGGGAAGGACAAGTTCGGTGAGGAGATGAAGAAAGACGCACAAACCGCTGGTGTTAATgcaagttataa-gttcctctttatgttttaaatttcttccatttttatgcctcttcactcagttgcaccactgcacatactgccttgacctt---accatctttaaacag

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G540538_T02 (Zea mays), 5'ss of exon 5
GATGCTTCAAATCCCTGGAGCAACAAGCTATATGGGATGCATTGGAAAGGACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttttcacttctttacatcttttgcagcttttccatggttatccatctctccattttagattagttgttttgttactgagacctct-taacaatccatgatcag
|||||||||||  ||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| |  ||  ||| || |||| ||| |||||||   ||  ||    ||||        || |  | |  |    | |  | ||||   ||| |||  ||   |  |  | |||   |  |    |||  ||||
GATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagtttttaatctcatt---gtcttc----atgttactttagacagttttgttgcaattt---attggttaattcactcatatggccttgatgtcgtcgcatactcag

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G135132_T01 (Zea mays), 5'ss of exon 5
GATGCTTCAAATCCCTGGAGCAACAAGCTATATGGGATGCATTGGAAAGGACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagtttt---ttca-cttctttacatcttttgcagcttttccatggttatccatctctccattttagattagttgttttgttactgagacctcttaacaatccatgatcag
|||||||||||  ||||| |||||||| || |||||||||||||| |||||||||||||| ||||| |||||||||||  |  ||  ||| || |||| ||| ||||||    ||| |||||| |      ||    |  |    |  | ||  ||      |||    | | || |  ||| |  ||    | |||| | |  ||       
GATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTACTgttagttttaatctcatcttcttcatgctactttagacagtaatgttctgatttattggctaattgactaat-gtggccttgatgttgg---cgcttacctactcag------

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G089767_T01 (Zea mays), 5'ss of exon 3
GATGCTTCAAATCCCTGGAGCAACAAGCTATATGGGATGCATTGGAAAGGACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttttcacttctttacatcttttgcagcttttccatggttatccatctctccatttta-gattagttgttttgttactgagacctcttaacaatccatgatcag
|||||||||||| ||||| ||| |||| || || || ||||| || ||||| |||||||| ||||| ||||| |||||  || ||  ||||||| |||||||||||| |    |  ||||   | ||||      | |  ||||     |||  |  ||||| |  | |||    | |    | |  | || |   ||| |         
GATGCTTCAAATTCCTGGTGCATCAAGTTACATTGGTTGCATCGGGAAGGATAAGTTTGGTGAGGAGATGAAAAAAAATGCACAAGCTGCTGGTATTAATgtaagttgtaaggccccttt---tttttt------tctttatggca---cattacctcatttcacaactagcaactataaccccgccatctat--gcaaccag-------

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G36630.1 (Glycine max), 5'ss of exon 5
GATGCTTCAAATCCCTGGAGCAACAAGCTATATGGGATGCATTGGAAAGGACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttttcacttctttacatcttttgcagcttttccatggttatccatctctccattttagattagttgttttgttactgagacct-cttaacaatccatgatcag
|||||| ||| | ||||| |||||||| || |||||  |||| |||||||| ||||||||||| || |||||||| |||||||| ||||||||||| |||||| ||||  ||  |    || ||||| | |     || ||| || ||     |||   |     | | | ||||||   | |   || |  |||   |||||| |    
GATGCTCCAAGTTCCTGGTGCAACAAGTTACATGGGTGGCATAGGAAAGGATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAAGCTTGCTGGTGTAAATgtaggtttaatc-ttatgatatatcttctcc-----tttcattgtcatgtgcttctttgt-----actggctgttttagaaatttaacttatttattcatccatcag---

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G33910.3 (Glycine max), 5'ss of exon 2
GATGCTTCAAATCCCTGGAGCAACAAGCTATATGGGATGCATTGGAAAGGACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttttcacttctttacatcttttgcagcttttccatggttatccatctctccattttagattagttgttttgttactgagacctcttaacaatccatgatcag
|||||| ||| | ||||| |||||||| || |||||  |||| |||||||| ||||||||||| || |||||||| |||||||  ||||||||||| |||||| |||   |    |  ||  ||||| | |     || ||| || ||     |||   |     | | | ||||||   |     || | || ||  ||    |||||
GATGCTCCAAGTTCCTGGTGCAACAAGTTACATGGGTGGCATAGGAAAGGATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAAATgtaggttcaatgttatgatt-tatcttctcc-----tttcattgtcatgtgcttctgtgt-----actggctgttttagaaaattaacttatttac--tcatccatcag

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G06580.1 (Glycine max), 5'ss of exon 5
GATGCTTCAAATCCCTGGAGCAACAAGCTATATGGGATGCATTGGAAAGGACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttttcacttc-tttacatcttttgcagcttttccatggttatccatctctccattttagattagttgttttgttactgagacctcttaacaatccatgatcag
||||||||||   || || || ||||| ||||| || ||||| ||||||||||| ||||| ||||| |||||||| || |  | ||| | |||||| || ||||||||  ||   |  |||   || |       || |     | ||       |   |  | ||| ||    || ||  | |||   || |   || || |  |||||
GATGCTTCAAGCACCAGGTGCCACAAGTTATATAGGTTGCATAGGAAAGGACAAATTTGGAGAGGAGATGAAGAAGAAATGTACACTAGATGGTGTAAAGgtaagtttaatcttgtgatttgtctcctcctttctttgtgataagctactttgtgcctgacctaagaataccatttctgaaattga---ctttattcattcaaaaatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137599|gb|CB922937.1|CB922937
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|71864075|gb|DT013130.1|DT013130
EST:     ATAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|110687648|gb|EE065296.1|EE065296
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|71863003|gb|DT012058.1|DT012058
EST:     ATAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|110728204|gb|EE103570.1|EE103570
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAATTCAAAACTTGCTGGTGTTAAC                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|351023138|gb|FQ432521.1|FQ432521
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|351023529|gb|FQ432912.1|FQ432912
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|351038074|gb|FQ460816.1|FQ460816
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|352794243|gb|FQ479485.1|FQ479485
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|71860280|gb|DT009335.1|DT009335
EST:     ATAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|30132011|gb|CB917350.1|CB917350
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|71861873|gb|DT010928.1|DT010928
EST:     ATAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|161716356|gb|FC066867.1|FC066867
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAC                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGTTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|110693709|gb|EE070177.1|EE070177
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|349824265|gb|FQ417652.1|FQ417652
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAATTCAAAACTTGCTGGTGTTAAC                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|352794240|gb|FQ479482.1|FQ479482
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|110391898|gb|EC956929.1|EC956929
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|71859146|gb|DT008201.1|DT008201
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|351028349|gb|FQ427245.1|FQ427245
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|110708040|gb|EE085129.1|EE085129
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAATTCAAAACTTGCTGGTGTTAAC                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|71860232|gb|DT009287.1|DT009287
EST:     ATAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|71865109|gb|DT014164.1|DT014164
EST:     ATAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|71864474|gb|DT013529.1|DT013529
EST:     ATAAGTTTGGGGAGGAAATGAAGAAAAGCTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|351013485|gb|FQ425516.1|FQ425516
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|110703696|gb|EE080770.1|EE080770
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAATTCAAAACTTGCTGGTGTTAAC                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|71863288|gb|DT012343.1|DT012343
EST:     ATAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|27581929|gb|CB004624.1|CB004624
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|351026422|gb|FQ428434.1|FQ428434
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|110689258|gb|EE065335.1|EE065335
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAC                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|352786996|gb|FQ476029.1|FQ476029
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACCTGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|161712338|gb|FC061663.1|FC061663
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAC                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|71862297|gb|DT011352.1|DT011352
EST:     ATAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|30125628|gb|CB910967.1|CB910967
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|351038237|gb|FQ460929.1|FQ460929
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|352786981|gb|FQ476014.1|FQ476014
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|110685346|gb|EE063661.1|EE063661
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|71860319|gb|DT009374.1|DT009374
EST:     ATAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|110685881|gb|EE062990.1|EE062990
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|71862322|gb|DT011377.1|DT011377
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATTGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|30129600|gb|CB914939.1|CB914939
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|71855237|gb|DT004292.1|DT004292
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAATTCAAAACTTGCTGGTGTTAAC                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|110726165|gb|EE101710.1|EE101710
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAATTCAAAACTTGCTGGTGTTAAC                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|110715240|gb|EE093065.1|EE093065
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAATTCAAAACTTGCTGGTGTTAAC                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|30129081|gb|CB914420.1|CB914420
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAC                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|110698283|gb|EE075646.1|EE075646
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|71864037|gb|DT013092.1|DT013092
EST:     ATAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
EST: gi|46917497|gb|CN546826.1|CN546826
EST:     ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAAT                         GTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC
genomic: ACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttt ... ccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGCTTCAAATCCCTGGAGCAACAAGCTATATGGGATGCATTGGAAAGGACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTAATgtaagttttttcacttctttacatcttttgcagcttttccatggttatccatctctccattttagattagttgttttgttactgagacctcttaacaatccatgatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA