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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGAGAAGGAATTAGCCATGGAACCAGCGATCAAATGGGCTGGCAATCCCAACATAATTTTGGTGCTAAAATGGTTGCCTTTCCGAATTACAATTCAGgtcagaagagcctaaacacaatccttaacagcagaatgtgtgtttttagctcgtataaatagagaatgtatctctcttttctgccggaagattgattatgcttgttctcag

Basic information

species Vitis vinifera
transcript Vv13s0019g04450.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04450.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G35410.1 (Glycine max), 5'ss of exon 5
TAATGAGAAGGAATTAGCCATGGAACCAGCGATCAAATGGGCTGGCAATCCCAACATAATTTTGGTGCTAAAATGGTTGCCTTTCCGAATTACAATTCAGgtcagaagagcct--aaacacaatccttaacagcagaatgtgtgtttttagctcgtataaatagagaatgtatctctcttttctgccggaagattgattatgcttgttctcag
 ||||| |||||||| | |||||||| ||  |||||||||||||| ||||| |||||| |  ||    |  |   ||   ||||    || || ||||||||||||  |||||  |  ||||||||| ||  | | |   ||| |||| || || |  ||   ||  |||       |||| || | || | ||| ||| || || ||  |||
AAATGAAAAGGAATTGGTCATGGAACAAGTTATCAAATGGGCTGGTAATCCAAACATAGTGGTGTCCTTGTATGTGTCATCTTTGAAGATCACCATTCAGgtcagataagcctcgaggcacaatcctaaatggtaaa---tgttttttaaggtccttcaa---gatgatg-------ctttccttctggga-attcattttgattctttgcag

upper sequence: Vv13s0019g04450.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G04220.1 (Arabidopsis thaliana), 5'ss of exon 4
TAATGAGAAGGAATTAGCCATGGAACCAGCGATCAAATGGGCTGGCAATCCCAACATAATTTTGGTGCTAAAATGGTTGCCTTTCCGAATTACAATTCAGgtcagaagagcctaaacacaatccttaacagcagaatgtgtgtttttagctcgtataaatagagaatgtatctctcttttctgccggaagattgattatgcttgttctcag
 |||||||||||  |     | |||||| | ||||||||||| ||||||||||||||  |||||||||||||     || |||| ||||||| | ||||||||||        ||||    |    || |   |||  |  |  | |     |   ||      ||||| | |  |||| | |                            
CAATGAGAAGGAGCTTCTGTTTGAACCATCAATCAAATGGGCAGGCAATCCCAACATTGTTTTGGTGCTAAAGGTTCTGTCTTTACGAATTAGAGTTCAGgtcagtgagagtgaaac----tgtcaaagaatggaacataggcatctccactgctgaatatctaaatgt-tttaactttgcag----------------------------