Sequence
atgc intronic sequence ATGC exonic sequenceCAATGCACATCTCATTGCATATCCTGATATTAACTGGCCTCAAATTGCAGAAGAGTTTGTAAAATCACTTGGACTAAGTTTCAATCCCTATGTGACTCAGgtttgtttttggcatttctgcttttcctcctcctaatgaaacatctttgtcattttcatattgtgtttctaaatcacacagccttgcatttcaagaagtg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G42130.1 (Glycine max), 5'ss of exon 4
CAATGCACATCTCATTGCATATCCTGATATTAACTGGCCTCAAATTGCAGAAGAGTTTGTAAAATCACTTGGACTAAGTTTCAATCCCTATGTGACTCAGgtttgtttttggcatttctgcttttcctcctcctaatgaaacatctttgtcattttcatattgtgtttct----aaatcacacagccttgcatttcaagaagtg
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CAATGCACATATTGTTGCATATCCTGATGTTAACTGGCCTCACATTGCAGAACAGTTTGTACACTCTCTTGGATTAAGTTTTAATCCTTATGTTGCTCAGgtatggttttaccttttca---ttttttttttctgttcaagtttaccagatatttatgcaattttttttataaaaaaaaactgaatcttaaaatttttagact-
upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G06780.1 (Glycine max), 5'ss of exon 4
CAATGCACATCTCATTGCATATCCTGATATTAACTGGCCTCAAATTGCAGAAGAGTTTGTAAAATCACTTGGACTAAGTTTCAATCCCTATGTGACTCAGgtttgtttttggcatttctgcttttcctcctcctaatgaaa-catctttgtca--ttttcatattgtgtttctaaatcacacagccttgcatttcaagaagtg
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CAATGCACATGTTGTTGCATATCCCAATGTTAACTGGCCTCACATTGCAGAACAGTTTGTACACTCTCTTGGATTAAGTTTTAATCCTTACGTTGCTCAGgtatggttttacctttccacttttttatcttttttttctgttcaattttaccagatctttgtgcaatttttttta-taaaaaaaaactgaatcataaaatt--
upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G28590.1 (Glycine max), 5'ss of exon 6
---CAATGCACATCTCATTGCATATCCTGATATTAACTGGCCTCAAATTGCAGAAGAGTTTGTAAAATCACTTGGACTAAGTTTCAATCCCTATGTGACTCAGgtttgtttttggcatttctgcttttcctcctcctaatgaaacatctttgtcattttcatattgtgtttctaaatcacacagccttgcatttcaagaagtg
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TTACAATGCACAT---GTTGCATATCCTGAAGTTAAGTGGCCTCACATTGCAGAACAGTTTCTACAATCTCTTGGATTAATTTTTAATCCTTATGTTGCCCAGgtatgcttttacctttttatttttttttattgttttttttgttttcttcaagtttatgcaatttaattttttaaaatgaatattgaggtttttagcaaccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37187463|gb|CF606816.1|CF606816EST: AAGAGTTTGTAAAATCACTTGGACTAAGTTTCAATCCCTATGTGACTCAG ATTGAAACTCATGACTACATGGCAAAGCTTTTCCATGGAATTATCCAGTTC
genomic: AAGAGTTTGTAAAATCACTTGGACTAAGTTTCAATCCCTATGTGACTCAGgtttgttttt ... tgttatgcagATTGAAACTCATGACTACATGGCAAAGCTTTTCCATGGAATTATCCAGTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATGCACATCTCATTGCATATCCTGATATTAACTGGCCTCAAATTGCAGAAGAGTTTGTAAAATCACTTGGACTAAGTTTCAATCCCTATGTGACTCAGgtttgtttttggcatttctgcttttcctcctcctaatgaaacatctttgtcattttcatattgtgtttctaaatcacacagccttgcatttcaagaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaagt