Sequence
atgc intronic sequence ATGC exonic sequenceGATGAAACTCTCTCAGCATTGCCATGCCTGGTCACGCTGAATCCTGGTGTGAGGATTGCTAATGTTGCTGCTGGCGGGCGTCATACTTTAGCATTGTCAGgtaaatccatgaaatcttggattgttgtccctaagcctcagttttaattcatagttctttttctgttgtggttatgcaacataggctggtactcagtatgactagaagccatggaagttctattttgtaaagcaacaaacttaatgttttctattgttcccccaagtttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G03870.1 (Glycine max), 5'ss of exon 5
GATGAAACTCTCTCAGCATTGCCATGCCTGGTCACGCTGAATCCTGGTGTGAGGATTGCTAATGTTGCTGCTGGCGGGCGTCATACTTTAGCATTGTCAGgtaaatccatgaaatcttggattgtt-gtc--cctaagcctcagttttaattcatagttctt-tttctgttgtggttatgcaacataggctggtactcagtatgactagaagccatggaagttctattttgtaaagcaacaaacttaatgttttctattgttcccccaagtttcag
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GATGATACTCAGACTGCATTGCCATGTCTTGTCACACTAAATCCTGGTGTAAGGATAGCAAGTGTAGCTGCTGGTGGTCGCCATACCTTAGCATTGTCAGgta--ttgactttattatgaactatttgtcaacctaggtctaaaattttatctgttattttcgtatatgatgtgataatctt---ttggttgaagcagaactt---tttgtgttatggaagatcagttatgcaatctaagacatgtcattgattgtaat-tttctgtgagtttcag
upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G34470.1 (Glycine max), 5'ss of exon 5
GATGAAACTCTCTCAGCATTGCCATGCCTGGTCACGCTGAATCCTGGTGTGAGGATTGCTAATGTTGCTGCTGGCGGGCGTCATACTTTAGCATTGTCAGgtaaatccatgaaatcttggattgtt-gtc--cctaagcctcagttttaattcatagttctttttctgttgtggttatgcaacataggctggtactcagtatgactagaagccatggaagttctattttgtaaagcaacaaacttaatgttttctattgttcccccaagtttcag
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GATGATACTCAGACAGCATTGCCATGTCTTGTCACACTCAATCCAGGTGTAAGGATAGCAAGTGTAGCTGCTGGTGGTCGCCATACCTTAGCATTGTCAGgta--ttgactttattatgggctatttgtcaacctaggtctaaaattttatctatgctattttcgtatataatatgataatcttttggttgaagcataactt---tttgtgctatggaagatcagttatgcattcgaagacatgtcattgattgtaat-tttctggaagtttcag
upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G41810.1 (Glycine max), 5'ss of exon 5
GATGAAACTCTCTCAGCATTGCCATGCCTGGTCACGCTGAATCCTGGTGTGAGGATTGCTAATGTTGCTGCTGGCGGGCGTCATACTTTAGCATTGTCAGgta--aatccatgaaatcttggattgttgtccctaagcctcagttttaattcatagttctttttctgttgtggttatgcaacataggctggtactcagtatgactagaagccatggaagttctattttgtaaagcaacaaacttaatgttttctattgttccccca-agtttcag
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GATGATAGTCTGACAGCATTCCCATGTCTTGTCACACTAAATCCAGGGATAAGGATAGCTAGTGTTGCAGCTGGTGGACGTCATACACTAGCATTGTCAGgtacggaacctttttatggagtatttttacacctaaatctaagattttatctgttattttcttcccattgtg------tagcgtggtttggt-tgaagtatcac----aactatg--acttcta--------------agacttaccattgattctggttttctgagagtttcag
upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G55580.1 (Arabidopsis thaliana), 5'ss of exon 5
GATGAAACTCTCTCAGCATTGCCATGCCTGGTCACGCTGAATCCTGGTGTGAGGATTGCTAATGTTGCTGCTGGCGGGCGTCATACTTTAGCATTGTCAGgtaaatccatgaaatcttggattgttgtccctaagcctcagttttaattcatagttctttttctgttgtggttatgcaacataggctggtactcagtatgactagaagccatggaagttctattttgtaaagcaacaaacttaatgttttcta-ttgttcccccaagtttcag
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AACATTGACCTCTCGGCATTGCCTTGCCTTGTATCGTTGGCCCCAGGAGTTAGGATTGTTAGTGTTGCTGCTGGTGGTCGTCATACTCTAGCATTATCAGgt--------gagatttttagcttttcacacaccatgtcactaatgaggtaca-ttggttatcaattatgaaaaaaatatcagtggcggtatccattaagctaaagagcttttggtgtgctat-------aataatca-cttgatgcatcctaattttttttctgaagtccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110385026|gb|EC949508.1|EC949508EST: GAGGATTGCTAATGTTGCTGCTGGCGGGCGTCATACTTTAGCATTGTCAG ATGTTGGACAGGTGTGGGGTTGGGGCTATGGGGGTGAGGGGCAACTAGGTT
genomic: GAGGATTGCTAATGTTGCTGCTGGCGGGCGTCATACTTTAGCATTGTCAGgtaaatccat ... caagtttcagATGTTGGACAGGTGTGGGGTTGGGGCTATGGGGGTGAGGGGCAACTAGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGAAACTCTCTCAGCATTGCCATGCCTGGTCACGCTGAATCCTGGTGTGAGGATTGCTAATGTTGCTGCTGGCGGGCGTCATACTTTAGCATTGTCAGgtaaatccatgaaatcttggattgttgtccctaagcctcagttttaattcatagttctttttctgttgtggttatgcaacataggctggtactcagtatgactagaagccatggaagttctattttgtaaagcaacaaacttaatgttttctattgttcccccaagtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT