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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATGCATACCTCAAGATTCTATTCAATTTATTATCTCAACATTTTATGATCAAGTTGTGACACTGTCCACACATCCATATGGTTGCCGTGTGATACAGgttaagaaactatttttagtacattttgaatgttgtaactatgaacaaaagacagtaatgaatatgagcctaaagtgacacggatttcatgtgacag

Basic information

species Vitis vinifera
transcript Vv13s0019g02000.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g02000.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os05g01910.1 (Oryza sativa), 5'ss of exon 5
TGAATGCATACCTCAAGATTCTATTCAATTTATTATCTCAACATTTTATGATCAAGTTGTGACACTGTCCACACATCCATATGGTTGCCGTGTGATACAGgttaagaaactatttttagtacattttgaatgttgtaactatgaacaaaagacagtaatgaatatgagcctaaagtgacacggatttcatgtgacag------
 |||||||| |||||| || |||| || || ||| |||||||||| |||| |||||||||||   | ||||| |||||||||||||| || || |||||||| | | |  || | |  ||  | |  |  | |  | |    |    | |||   ||||  ||   | |  |   || ||     ||||||||| |       
AGAATGCATCCCTCAACATGCTATCCAGTTCATTGTCTCAACATTCTATGGTCAAGTTGTGATGTTATCCACTCATCCATATGGTTGTCGGGTTATACAGgt-atgcatataatatgcgtgtaatcagtttatgttga----ggtttacagatgttaat--atgcaaactcact-tgtcatc--cttcatgtgaaactcccag

upper sequence: Vv13s0019g02000.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g74030.1 (Oryza sativa), 5'ss of exon 5
TGAATGCATACCTCAAGATTCTATTCAATTTATTATCTCAACATTTTATGATCAAGTTGTGACACTGTCCACACATCCATATGGTTGCCGTGTGATACAGgttaagaaactatttttagtacattttgaatgttgtaactatgaacaaaagacagta-atgaatatgagcctaaagtgacacggat-ttcatgtgacag---------------
||||||||| || ||  || |||| || || ||| | ||||| || |||| |||||||||||  || || || |||||||||||||| || |||||||||||    | |||  |  |   |||   ||      ||   |     ||| |  ||||  ||  ||   |    | ||  ||||  |  ||  |    ||                
TGAATGCATTCCACAGCATGCTATCCAGTTCATTGTTTCAACCTTCTATGGTCAAGTTGTGATGCTATCAACTCATCCATATGGTTGTCGGGTGATACAGgt----acacttgtagtgccacagcatgctatccgttgattgcttcaatatccagtctattcatgctacttcatagctacactaacctttgtcatgcaaattcactggacgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110700862|gb|EE077890.1|EE077890
EST:     ATCAAGTTGTGACACTGTCCACACATCCATATGGTTGCCGTGTGATACAG                         AGAGTCCTGGAGCACTGTCATGATCCAAAAACCCAACGTATAATGATGGAT
genomic: ATCAAGTTGTGACACTGTCCACACATCCATATGGTTGCCGTGTGATACAGgttaagaaac ... catgtgacagAGAGTCCTGGAGCACTGTCATGATCCAAAAACCCAACGTATAATGATGGAT
EST: gi|30301304|gb|CB978098.1|CB978098
EST:     ATCAAGTTGTGACACTGTCCACACATCCATATGGTTGCCGTGTGATACAG                         AGAGTCCTGGAGCACTGTCATGATCCAAAAACCCAACGTATAATGATGGAT
genomic: ATCAAGTTGTGACACTGTCCACACATCCATATGGTTGCCGTGTGATACAGgttaagaaac ... catgtgacagAGAGTCCTGGAGCACTGTCATGATCCAAAAACCCAACGTATAATGATGGAT