1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGGCTGTCCATTGCGCTGTTCATTTTGTGCCACTGGCAAGGGAGGTTACTCAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAGgtttgtttgacatcttttcattgtctaattttctgggtcctattaaatgggttgttttaatatactgctttttttcaccattttgaaaaaaatacagtgc...
species | Vitis vinifera |
transcript | Vv13s0019g01070.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCAAGGGAG-TTACTCAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAG GTCTTGGCAATEST: gi|351046512|gb|FQ453128.1|FQ453128
genomic: GCAAGGGAGGTTACTCAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAGgtttgtttga ... atgtgcacagGTCTTGGCAAT
EST: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAG GTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTTEST: gi|352794375|gb|FQ481606.1|FQ481606
genomic: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAGgtttgtttga ... atgtgcacagGTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTT
EST: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAG GTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTTEST: gi|351048097|gb|FQ442067.1|FQ442067
genomic: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAGgtttgtttga ... atgtgcacagGTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTT
EST: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAG GTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTTEST: gi|352786528|gb|FQ479735.1|FQ479735
genomic: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAGgtttgtttga ... atgtgcacagGTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTT
EST: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAG GTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTTEST: gi|351038424|gb|FQ461116.1|FQ461116
genomic: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAGgtttgtttga ... atgtgcacagGTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTT
EST: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAG GTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTTEST: gi|351054685|gb|FQ462715.1|FQ462715
genomic: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAGgtttgtttga ... atgtgcacagGTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTT
EST: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAG GTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTTEST: gi|351035218|gb|FQ458575.1|FQ458575
genomic: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAGgtttgtttga ... atgtgcacagGTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTT
EST: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAG GTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTTEST: gi|351032693|gb|FQ462407.1|FQ462407
genomic: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAGgtttgtttga ... atgtgcacagGTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTT
EST: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAG GTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTTEST: gi|351044866|gb|FQ449120.1|FQ449120
genomic: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAGgtttgtttga ... atgtgcacagGTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTT
EST: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAG GTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTTEST: gi|352795590|gb|FQ480178.1|FQ480178
genomic: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAGgtttgtttga ... atgtgcacagGTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTT
EST: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAG GTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTTEST: gi|352793767|gb|FQ481122.1|FQ481122
genomic: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAGgtttgtttga ... atgtgcacagGTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTT
EST: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAG GTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTT
genomic: CAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAGgtttgtttga ... atgtgcacagGTCTTGGCAATAGAGGAGATCTTTAAGCAAAGGGTGACAAATGTGGTGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGCTGTCCATTGCGCTGTTCATTTTGTGCCACTGGCAAGGGAGGTTACTCAAGGAACCTTCAGAGGCATGAAATTGTTGAGCAGgtttgtttgacatcttttcattgtctaattttctgggtcctattaaatgggttgttttaatatactgctttttttcaccattttgaaaaaaatacagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa