1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATGTTACTGAGCCATTGTTGATTGAGGTTGATCAAATATACCATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatattttatctccttaccattaaacttaaagaagcatttaaaagtaatttattaactttaaatattttctattttgcttactattttctttccc...
species | Vitis vinifera |
transcript | Vv13s0019g00840.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|71860037|gb|DT009092.1|DT009092
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|30132964|gb|CB918303.1|CB918303
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: GCATCACCNAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|71882833|gb|DT031888.1|DT031888
genomic: GCATCACC-AATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|110703601|gb|EE080591.1|EE080591
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|110690502|gb|EE067657.1|EE067657
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|110702160|gb|EE080556.1|EE080556
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|156736486|gb|EV240607.1|EV240607
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|71863746|gb|DT012801.1|DT012801
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCEST: gi|71859225|gb|DT008280.1|DT008280
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACC
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|110357315|gb|EC920771.1|EC920771
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|110723901|gb|EE099257.1|EE099257
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|110720753|gb|EE096961.1|EE096961
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|110721290|gb|EE098120.1|EE098120
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|110727671|gb|EE104694.1|EE104694
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|110714087|gb|EE090592.1|EE090592
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|110719051|gb|EE096588.1|EE096588
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|110687991|gb|EE066031.1|EE066031
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|33407947|gb|CF213574.1|CF213574
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|71862913|gb|DT011968.1|DT011968
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|110692310|gb|EE071412.1|EE071412
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|110356627|gb|EC919593.1|EC919593
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|30299440|gb|CB976234.1|CB976234
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGEST: gi|71860871|gb|DT009926.1|DT009926
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
EST: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAG ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
genomic: ATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatat ... tacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTTACTGAGCCATTGTTGATTGAGGTTGATCAAATATACCATCTTGCTTGTCCTGCATCACCAATTTTCTACAAATACAATCCTGTGAAGgtgtgtatattttatctccttaccattaaacttaaagaagcatttaaaagtaatttattaactttaaatattttctattttgcttactattttctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagtaa