Sequence
atgc intronic sequence ATGC exonic sequenceTGAGGGATTTTTCTATTTCCCGAGCATCTGTGGATTGGGGCATTCCTGTTCCTAATGACAACAAGCAGACCATATACGTCTGGTTTGATGCTTTACTGGGgtaaagtttttcctttagttcggaattattttatgttgcaagtttgtgagcattatcaattaacataaacttggtgcttcatttccttgctttccttgct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g11120.1 (Oryza sativa), 5'ss of exon 5
TGAGGGATTTTTCTATTTCCCGAGCATCTGTGGATTGGGGCATTCCTGTTCCTAATGACAACAAGCAGACCATATACGTCTGGTTTGATGCTTTACTGGGgtaaagtttttcctttagttcggaattattttatgttgcaagtttgtgagcattatcaattaacataaacttggtgcttcatttccttgctttccttgct---
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TAAGGGACTTCTCTATTTCCCGTGCATCTGTAGAGTGGGGTATTCCGGTGCCAAATGACACCAAACAGACAATATACGTGTGGTTTGATGCATTATTAGGgtatgtttctctgcttctttacatgatattcattaatgtgtgctcctgtttactagtc-ttgctgggaatttattatactagt--cgtgcttttatttcttcg
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G029055_T02 (Zea mays), 5'ss of exon 5
TGAGGGATTTTTCTATTTCCCGAGCATCTGTGGATTGGGGCATTCCTGTTCCTAATGACAACAAGCAGACCATATACGTCTGGTTTGATGCTTTACTGGGgtaaagtttttcctttagttcggaattattt-tatgttgcaagtttgtgagcattatcaattaacataaacttggtgcttcatttccttgctttccttgct--
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TAAGGGACTTTTCTATTTCTCGTGCATCTGTAGAATGGGGCATTCCGGTGCCAAACGATACCAAGCAGACAATATATGTGTGGTTTGATGCTCTATTAGGgtatgtttctcttttctgcacctgctcatttgcatatggttaataatggagacttgctattttatgt---ttttataactcattctgttgtatatgtattttt
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G43550.1 (Glycine max), 5'ss of exon 5
TGAGGGATTTTTCTATTTCCCGAGCATCTGTGGATTGGGGCATTCCTGTTCCTAATGACAACAAGCAGACCATATACGTCTGGTTTGATGCTTTACTGGGgtaaagtttttcctttagttcggaattattttatgttgcaagtttgtgagcattatcaattaacataaacttggtgcttcatttccttgctttccttgct
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TGAGGGACTTTTCCATTTCCCGAGCATCAGTTGATTGGGGCATTCCTGTTCCCGATGACAAGACCCAGACTATATATGTATGGTTTGATGCTTTACTAGGgtaaggaatgcattttatggcttgtgcgtgcttctctaatttcccttgactctattctataatcttatagttcctgtctatcataatcaatgactatcag
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 5
TGAGGGATTTTTCTATTTCCCGAGCATCTGTGGATTGGGGCATTCCTGTTCCTAATGACAACAAGCAGACCATATACGTCTGGTTTGATGCTTTACTGGGgtaaag---tttttcctttagttcggaattattttatgttgcaagtttgtgagcattatcaattaacataaacttggtgcttcatttccttgctttccttgct
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TGAGGGACTTTTCCATTTCCCGAGCATCAGTTGAGTGGGGCATTCCTGTTCCTGATGACAAGACCCAGACTATATATGTATGGTTTGATGCTTTACTAGGgtaaggatatgtattttatagcttgtgcgtgcttc-tctagtttccct-tgactctattctataatcttatagttcctgtctatcataatcaatgactatca-
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G55400.2 (Arabidopsis thaliana), 5'ss of exon 4
TGAGGGATTTTTCTATTTCCCGAGCATCTGTGGATTGGGGCATTCCTGTTCCTAATGACAACAAGCAGACCATATACGTCTGGTTTGATGCTTTACTGGGgtaaag----tttttcctttagttcggaattattttatgttgcaagttt-gtgagcattatcaattaacataaacttggtgcttcatttccttgctttccttgct----------------------------------------------------------------------
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TAAGAGATTTTTCCATTTCTCGAGCATTAGTGGATTGGGGAATTCCTGTTCCCGACGACGATAAGCAAACCATATATGTTTGGTTTGATGCTCTACTTGGgtatatatcttttttctttctatcaagaattatatgtggttactgcttaagtctttgttatgtctccacacattgatgatatgtcataacttatgtctgttcatataaagaaaggttgtttctcttagttgcgagattaaacattgaagttaatatttgccgtttctcattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30255117|gb|CB971564.1|CB971564EST: CCTAATGACAACAAGCAGACCATATACGTCTGGTTTGATGCTTTACTGGG TTATATTTCAGCACTATCAGAAGACAACGAACAACCTGATTTACAAAGTGC
genomic: CCTAATGACAACAAGCAGACCATATACGTCTGGTTTGATGCTTTACTGGGgtaaagtttt ... tcttatttagTTATATTTCAGCACTATCAGAAGACAACGAACAACCTGATTTACAAAGTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGGGATTTTTCTATTTCCCGAGCATCTGTGGATTGGGGCATTCCTGTTCCTAATGACAACAAGCAGACCATATACGTCTGGTTTGATGCTTTACTGGGgtaaagtttttcctttagttcggaattattttatgttgcaagtttgtgagcattatcaattaacataaacttggtgcttcatttccttgctttccttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacataa