1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGATCACTTTTTTGATGTTATAACCAACATTATTGGCCTCATTGCTGTACTCCTTGCCAATTATATCAGCGATTGGATGGACCCAGTTGGAGCTATCATTgtaagtggaaattctttcctgctttccccaaattcccaattttcccctgggagttgaatgttacttgcagatggttgtaactgatcagaatcagttccaa...
species | Vitis vinifera |
transcript | Vv13s0019g00020.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCTTGCCAATTATATCAGCGATTGGATGGACCCAGTTGGAGCTATCATT CTGGCCTTGTACACCATCCGCACATGGACATTAACTGTGTTAGAAAATGTAEST: gi|110691965|gb|EE070667.1|EE070667
genomic: TCCTTGCCAATTATATCAGCGATTGGATGGACCCAGTTGGAGCTATCATTgtaagtggaa ... cttgctgcagCTGGCCTTGTACACCATCCGCACATGGACATTAACTGTGTTAGAAAATGTA
EST: AGCGATTGGATGGACCCAGTTGGAGCTATCATT CTGGCCTTGTACACCATCCGCACATGGACATTAACTGTGTTAGAAAATGTAEST: gi|110377417|gb|EC942479.1|EC942479
genomic: AGCGATTGGATGGACCCAGTTGGAGCTATCATTgtaagtggaa ... cttgctgcagCTGGCCTTGTACACCATCCGCACATGGACATTAACTGTGTTAGAAAATGTA
EST: CTTGCCAATTATATCAGCGATTGGATGGACCCAGTTGGAGCTATCATT CTGGCCTTGTACACCATCCGCACATGGACATTAACTGTGTTAGAAAATGTAEST: gi|110732363|gb|EE107582.1|EE107582
genomic: CTTGCCAATTATATCAGCGATTGGATGGACCCAGTTGGAGCTATCATTgtaagtggaa ... cttgctgcagCTGGCCTTGTACACCATCCGCACATGGACATTAACTGTGTTAGAAAATGTA
EST: TCCTTGCCAATTATATCAGCGATTGGATGGACCCAGTTGGAGCTATCATT CTGGCCTTGTACACCATCCGCACATGGACATTAACTGTGTTAGAAAATGTA
genomic: TCCTTGCCAATTATATCAGCGATTGGATGGACCCAGTTGGAGCTATCATTgtaagtggaa ... cttgctgcagCTGGCCTTGTACACCATCCGCACATGGACATTAACTGTGTTAGAAAATGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCACTTTTTTGATGTTATAACCAACATTATTGGCCTCATTGCTGTACTCCTTGCCAATTATATCAGCGATTGGATGGACCCAGTTGGAGCTATCATTgtaagtggaaattctttcctgctttccccaaattcccaattttcccctgggagttgaatgttacttgcagatggttgtaactgatcagaatcagttccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc