Sequence
atgc intronic sequence ATGC exonic sequenceTTTAGTTGTGCGATCTCATGAAGTAAAGGATGAAGGCTATGAGATTGAACATGATGGCAAGCTTATTACTGTGTTTTCTGCTCCAAACTATTGTGATCAGgtatgtgaggcttaacctttttaatagttccttggatttgaaagcttagaactcgtgtacattcgactaaactcctccaggggacatcacatatgtatat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os05g11550.1 (Oryza sativa), 5'ss of exon 11
TTTAGTTGTGCGATCTCATGAAGTAAAGGATGAAGGCTATGAGATTGAACATGATGGCAAGCTTATTACTGTGTTTTCTGCTCCAAACTATTGTGATCAGgtatgtgaggcttaaccttt--ttaatagttc---------cttggatttgaaagct-tagaactcgtgtac-attcgactaaactcctccaggggacatcacatatgtatat----------------------------------------
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CCTTGTTGTTCGATCCCATGAAGTGAAAGATGAAGGCTATGAAATTGAACATGATGGAAAGCTTATAACGGTGTTCTCTGCTCCCAATTATTGCGACCAGgtttgcgacaatagaactatagttggttgcacaaactaataattgcaccataaggatatggaagttgtttcctggtcaattttatgctcccgatattcttcttaaatatctaatcatgccttttacatcttgtgaattgcgattttgatacag
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G126435_T02 (Zea mays), 5'ss of exon 10
TTTAGTTGTGCGATCTCATGAAGTAAAGGATGAAGGCTATGAGATTGAACATGATGGCAAGCTTATTACTGTGTTTTCTGCTCCAAACTATTGTGATCAGgtat--gtgaggcttaacctttttaatagttccttggat------ttgaaagcttagaactcgtgtacattcgactaaactcctccaggggacatcacatatgtatat
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TCTTATTGTCCGGTCTCATGAAGTAAAGGATGAAGGCCATGAAATTGAACATGATGGAAAGCTTATAACAGTCTTCTCTGCGCCTAATTACTGTGACCAGgtataggtgttgtttgcttatactaccatttgcattgttatgccattgaatgctgattgcttttcttgatgtgtctcg-ttcattgaggcaaaaaaaagtt-------
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G12440.1 (Glycine max), 5'ss of exon 11
TTTAGTTGTGCGATCTCATGAAGTAAAGGATGAAGGCTATGAGATTGAACATGATGGCAAGCTTATTACTGTGTTTTCTGCTCCAAACTATTGTGATCAGgtatgtgaggcttaacctttttaatagttccttggatttgaaagcttagaactcgtgtacattcgactaaactcctccaggggacatcacatatgtatat-------
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-TTAGTTGTGCGATCTCATGAAGTAAAGGACGAGGGTTATGAGATTGAACATGATGGTAAACTCATAACTGTGTTTTCTGCTCCAAATTACTGTGACCAGGta----acacatatcccttttgctacattcttttctattatggcatttg-cttatttg-attgtcttggaagatttgagaggagcgaaggggggctgggggaatgg
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G42380.1 (Glycine max), 5'ss of exon 11
TTTAGTTGTGCGATCTCATGAAGTAAAGGATGAAGGCTATGAGATTGAACATGATGGCAAGCTTATTACTGTGTTTTCTGCTCCAAACTATTGTGATCAGgtatgtgaggcttaacctttttaatagttccttggatttgaaagcttagaactcgtgtacattcgactaaactcctccaggggacatcacatatgtatat-
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TTTAGTTGTGAGATCTCACGAAGTAAAGGATGAGGGTTATGAGATTGAACATGAGGGTAAACTCATAACTGTGTTTTCTGCTCCAAATTACTGTGACCAGgta-accatatcccttctgctatattcttttttatttttatggcatttgcttacttgattgtcttggaagatttgagaggagggagaaagggggctggggg
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G42810.2 (Arabidopsis thaliana), 5'ss of exon 12
TTTAGTTGTGCGATCTCATGAAGTAAAGGATGAAGGCTATGAGATTGAACATGATGGCAAGCTTATTACTGTGTTTTCTGCTCCAAACTATTGTGATCAGgtatgtgaggcttaacctttttaatagttccttggatttgaaagcttagaactcgtgtacattcgactaaactcctccaggggacatcacatatgtatat
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TTTGTTGGTCCGGTCACATGAAGTAAAAGATGAAGGTTATGAGGTTGAACATGACGGTAAACTCATAACTGTCTTCTCTGCGCCAAATTACTGTGATCAGgtaactcagac---actcctgt-----cttctt--atttcaaaac--agcacccagttacttgattctttacttaac-atggactggtattgttgtag--
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S87_139V6.1 (Physcomitrella patens), 5'ss of exon 11
TTTAGTTGTGCGATCTCATGAAGTAAAGGATGAAGGCTATGAGATTGAACATGATGGCAAGCTTATTACTGTGTTTTCTGCTCCAAACTATTGTGATCAGgtatgtgaggcttaac---ctt-----tttaata------gttccttggatttgaaagcttagaactcgtgtacattcgactaaactcctccagggga-catcacatatgtatat
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GCTAGTGGTGCGGTCCCATGAGGTCAAGGATGAGGGCTATGAAGTGGACCATGGCGGCAAACTCATTACTGTCTTCTCTGCACCAAATTACTGTGATCAGgtaaatcatattggacaagcttgtagctttgacccagaatgtccatgcggtttgaaaacacggca-tcttttgtgctaagttgtactgatcttttacatcatcttatgtctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110380672|gb|EC945956.1|EC945956EST: ATGATGGCAAGCTTATTACTGTGTTTTCTGCTCCAAACTATTGTGATCAG ATGGGCAACAAGGGTGCTTTTATTCGTTTTGAAGCCCCAGATCTGAAGCCA
genomic: ATGATGGCAAGCTTATTACTGTGTTTTCTGCTCCAAACTATTGTGATCAGgtatgtgagg ... gctgttgcagATGGGCAACAAGGGTGCTTTTATTCGTTTTGAAGCCCCAGATCTGAAGCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTAGTTGTGCGATCTCATGAAGTAAAGGATGAAGGCTATGAGATTGAACATGATGGCAAGCTTATTACTGTGTTTTCTGCTCCAAACTATTGTGATCAGgtatgtgaggcttaacctttttaatagttccttggatttgaaagcttagaactcgtgtacattcgactaaactcctccaggggacatcacatatgtatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggaca