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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCAGATTTATATTCCAGTCATAAACTGGTTTCTGCTGGTGGTTTGCTTGGTGTTAGTCATCTTTATCTCAAATGTCAATGAGATTGGAAATGCATATGgtaaacttctttccaacctacctttcattcataatagatctatatatatatatatatatatatatatatatatatatatatatgctggtgttttcatttt...

Basic information

species Vitis vinifera
transcript Vv12s0142g00170.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G07720.1 (Glycine max), 5'ss of exon 6
GGCCAGATTTATATTCCAGTCATAAACTGGTTTCTGCTGGTGGTTTGCTTGGTGTTAGTCATCTTTATCTCAAATGTCAATGAGATTGGAAATGCATATGgtaa-acttctttccaacctacctttcattcataatagatctatatatatatatatatat-atatatatatatatatatatatatgctggtgttttcatttt
|||||||| |||||||| |||||||||||||||||  |||  ||||  |||||| | |||   | ||| || |   |  |||||||||||||||||||||||||   ||  || |||  |  || |  ||  | | | |  ||  | | | || || ||| |   ||||| | |||| |  || |     |||    | | |
GGCCAGATCTATATTCCTGTCATAAACTGGTTTCTCTTGGCTGTTTCTTTGGTGCTTGTCTGTTCTATATCCAGCATTGATGAGATTGGAAATGCATATGgtaatgatttatttcaatttctctatttttatttacacagataattttgt-taaatttatcagccatatacacatat-tgcatgtcaaattgtaaataatgt

upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G07720.1 (Glycine max), 5'ss of exon 6
GGCCAGATTTATATTCCAGTCATAAACTGGTTTCTGCTGGTGGTTTGCTTGGTGTTAGTCATCTTTATCTCAAATGTCAATGAGATTGGAAATGCATATGgtaa-acttctttccaacctacctttcattcataatagatctatatatatatatatatat-atatatatatatatatatatatatgctggtgttttcatttt
|||||||| |||||||| |||||||||||||||||  |||  ||||  |||||| | |||   | ||| || |   |  |||||||||||||||||||||||||   ||  || |||  |  || |  ||  | | | |  ||  | | | || || ||| |   ||||| | |||| |  || |     |||    | | |
GGCCAGATCTATATTCCTGTCATAAACTGGTTTCTCTTGGCTGTTTCTTTGGTGCTTGTCTGTTCTATATCCAGCATTGATGAGATTGGAAATGCATATGgtaatgatttatttcaatttctctatttttatttacacagataattttgt-taaatttatcagccatatacacatat-tgcatgtcaaattgtaaataatgt

upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G24530.1 (Glycine max), 5'ss of exon 8
GGCCAGATTTATATTCCAGTCATAAACTGGTTTCTGCTGGTGGTTTGCTTGGTGTTAGTCATCTTTATCTCAAATGTCAATGAGATTGGAAATGCATATGgtaa--acttctttccaacctacctttcattcataatagatctatatatatatatatatatatatatatatatatatatatatatgctggtgttttcatttt
|||||||| ||||| || |||||||||||||||||  |||  ||||  |||||| | |||   | ||| || |   |  |||||||||||||||||||||||||  | ||  || |||  |   | |  ||      | |  ||  | | |  |  |    |   ||||| | |||| |  ||||     |||    | |  
GGCCAGATCTATATCCCTGTCATAAACTGGTTTCTCTTGGCTGTTTCTTTGGTGCTTGTCTGTTCTATATCCAGCATTGATGAGATTGGAAATGCATATGgtaatgattttgtttcaatttctttatttttatctccatagataattttgttaaagttatcagccatatacacatat-tgcatatcaaattgtaaataatg-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110700216|gb|EE078004.1|EE078004
EST:     GGTGTTAGTCATCTTTATCTCAAATGTCAATGAGATTGGAAATGCATATG                         GCATTGCCGAAATTGGGGTGATGATGATGACAACAATCTTAGTAACCATTG
genomic: GGTGTTAGTCATCTTTATCTCAAATGTCAATGAGATTGGAAATGCATATGgtaaacttct ... gcttttacagGCATTGCCGAAATTGGGGTGATGATGATGACAACAATCTTAGTAACCATTG
EST: gi|161718115|gb|FC066927.1|FC066927
EST:     GGTGTTAGTCATCTTTATCTCAAATGTCAATGAGATTGGAAATGCATATG                         GCATTGCCGAAATTGGGGTGATGATGATGACAACAATCTTAGTAACCATTG
genomic: GGTGTTAGTCATCTTTATCTCAAATGTCAATGAGATTGGAAATGCATATGgtaaacttct ... gcttttacagGCATTGCCGAAATTGGGGTGATGATGATGACAACAATCTTAGTAACCATTG