Sequence
atgc intronic sequence ATGC exonic sequenceATCTTACTATGACATTCGGGCAGCTCGAACTGCTATGCGTGCACTGCAGAATAAGCCCTTAAGACGAAGGAAACTTGACATTCATTTTTCAATTCCCAAGgtttgaactaagggctgaactgcattgagtaaagtccacgcattgcaggacgcagtgcttttttaatttagtttggtgctgttgatccactaacatctagtcatgcatttttgttccttatgatattccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0142g00100.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G12730.1 (Glycine max), 5'ss of exon 4
ATCTTACTATGACATTCGGGCAGCTCGAACTGCTATGCGTGCACTGCAGAATAAGCCCTTAAGACGAAGGAAACTTGACATTCATTTTTCAATTCCCAAGgtttgaactaagggctgaactgcattgagtaaagtccacgcattgcaggacgcagtgcttttttaatttagtttggtgctg-ttgatccactaacatctagtcatgcatttttgttccttatgatattccag
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ATCTTACTATGATATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGgtttgattttttt-tggcattactctgtgtttga-ctgtttatcattg-atgttgcctttcttttattaatctttcttctgcttgtttcag-----------------------------------------
upper sequence: Vv12s0142g00100.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G42230.1 (Glycine max), 5'ss of exon 3
ATCTTACTATGACATTCGGGCAGCTCGAACTGCTATGCGTGCACTGCAGAATAAGCCCTTAAGACGAAGGAAACTTGACATTCATTTTTCAATTCCCAAGgtttgaactaagggctgaactgcattgagtaaagtccacgcattgcaggacgcagtgcttttttaatttagtttggtgctgttgatccactaacatctagtcatgcatttttgttccttatgatattccag
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ATCTTACTATGATATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGgtttgttttttgtggcattattcagtgtttgactgattagcattg----atgttgcgtttgtttcattcatctttcttctgcttgtct--tag--------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713064|gb|FC062145.1|FC062145EST: ATAAGCCCTTAAGACGAAGGAAACTTGACATTCATTTTTCAATTCCCAAG GATAACCCATCAGAGAAGGACATTAACCAAGGGACTCTTGTTGTGTTTAAT
genomic: ATAAGCCCTTAAGACGAAGGAAACTTGACATTCATTTTTCAATTCCCAAGgtttgaacta ... gatattccagGATAACCCATCAGAGAAGGACATTAACCAAGGGACTCTTGTTGTGTTTAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCTTACTATGACATTCGGGCAGCTCGAACTGCTATGCGTGCACTGCAGAATAAGCCCTTAAGACGAAGGAAACTTGACATTCATTTTTCAATTCCCAAGgtttgaactaagggctgaactgcattgagtaaagtccacgcattgcaggacgcagtgcttttttaatttagtttggtgctgttgatccactaacatctagtcatgcatttttgttccttatgatattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA