Sequence
atgc intronic sequence ATGC exonic sequenceGAGCCAGGAAACAACTCTGATCATTACGGAAAATTCCCTATTGGCACAAAAGTTCAAGCAGTTTGGAGTGAAGATGGGGAATGgtgagtaaaataaagacatctaaacttctaatcaaattctgattattttttcatttgttttatctattttttattgtctgttttgattagttgattcctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0035g01830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G005737_T02 (Zea mays), 5'ss of exon 4
GAGCCAGGAAACAACTCTGATCATTACGGAAAATTCCCTATTGGCACAAAAGTTCAAGCAGTTTGGAGTGAAGATGGGGAATGgtgagtaaaataaagacatctaaacttctaatcaaattctgattattttttcatt--tgttttatctatt-ttttattgt--ctgttttgattagttgattcctcag
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GGACTGG---ATGACCTTTCACATTCCCATAAGTTTGCCGTTGGTACTAGAGTTCAAGCTGTGTGGAGTGAAGATGGAGAATGgtgagtttctctttgatatacctatcattgtttgtgtctagatgatcttacctttaatatttttcacatcatttcattacaacatgtttgattagctgaattgccag
upper sequence: Vv12s0035g01830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G00560.2 (Glycine max), 5'ss of exon 5
GAGCCAGGAAACAACTCTGATCATTACGGAAAATTCCCTATTGGCACAAAAGTTCAAGCAGTTTGGAGTGAAGATGGGGAATGgtgagtaaaataaagacatctaaacttctaatcaaattctgattattttttcatttgttttatctattttttattgtctgttttgattagttgattcctcag
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---CTAGATAGTAGTTCTGATCATCAAGAGAAACTTCCTGTTGGCACCAAAGTTCAGGCAGTTTGGAGTGAAGATGGGGAGTGgt---------attgttgtctgtcagtgtattttattttccatttcatttacccatgttcactgtgtgttcactt---tgtttt-atta--tgaatgtccag
upper sequence: Vv12s0035g01830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G40240.1 (Glycine max), 5'ss of exon 4
GAGCCAGGAAACAACTCTGATCATTACGGAAAATTCCCTATTGGCACAAAAGTTCAAGCAGTTTGGAGTGAAGATGGGGAATGgtgagtaaaataaagacatctaaacttctaatcaaattctgattattttttcatttgttttatctattttttattgtctgttttgattagttgattcctcag
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---CTGGATAGCAGCTCTGATCATCAAGAGAAACTTCCTGTTGGCACCAAAGTTCAGGCAGTTTGGAGTGAAGATGGGGAGTGgt---------attgttgtctgtcagtgtattttattttccatt--tcatttacctatgttcactgtgtgtgttcactttgttgtatta--tgaatgtccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30252727|gb|CB970278.1|CB970278EST: TTCCCTATTGGCACAAAAGTTCAAGCAGTTTGGAGTGAAGATGGGGAATG GTATGAAGCAACAATCGATTCCTTGACCCCAGATGGGTATTATGTTTCCTA
genomic: TTCCCTATTGGCACAAAAGTTCAAGCAGTTTGGAGTGAAGATGGGGAATGgtgagtaaaa ... gattcctcagGTATGAAGCAACAATCGATTCCTTGACCCCAGATGGGTATTATGTTTCCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCCAGGAAACAACTCTGATCATTACGGAAAATTCCCTATTGGCACAAAAGTTCAAGCAGTTTGGAGTGAAGATGGGGAATGgtgagtaaaataaagacatctaaacttctaatcaaattctgattattttttcatttgttttatctattttttattgtctgttttgattagttgattcctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG