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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGTTGGTGAGCTGCATCCTGATAAAAACAGTGATAACAAGCACGTGCTTTTCACACATAAGAATATCAACATTACATACAACAAAAATCAGgtttgtggtttgttaactttcatataaatcatatgatgggtcttcttgggatcacgtctgacaatgctctaagtttctattcttacag

Basic information

species Vitis vinifera
transcript Vv12s0035g00280.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g00280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTTTGTTGGTGAGCTGCATCCTGATAAAAACAGTGATAAC---AAGCACGTGCTTTTCACACATAAGAATATCAACATTACATACAACAAAAATCAGgtttgtggtttgttaactttcatataaatcatatgatgggtcttcttgggatcacgtctgacaatgctctaagtttctattcttacag
| ||||| ||||||||||||||||| ||||| ||||| |||   ||||| || |||| |||||||||||| ||     | | |||||||||| | |||||  ||    ||||| |   |   |||   |||  |||| | |  |  | |  || ||||  |      || || |||||| | | ||
GCTTTGTGGGTGAGCTGCATCCTGACAAAAATAGTGAAAACGGCAAGCATGTTCTTTACACACATAAGAACATTGTTGTCAAATACAACAAAGACCAGgtcggt----tgttaccacgccattaagcaatagtatggatatcatgtgaactacatctgtga---tcttatgtatctattttaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351023401|gb|FQ432784.1|FQ432784
EST:     ACGTGCTTTTCACACATAAGAATATCAACATTACATACAACAAAAATCAG                         ATTATTCATGTTAATCTTTCTCAAGAGAATCCAAAACCGATGGAAGCAGGA
genomic: ACGTGCTTTTCACACATAAGAATATCAACATTACATACAACAAAAATCAGgtttgtggtt ... attcttacagATTATTCATGTTAATCTTTCTCAAGAGAACCCAAAACCGATGGAAGCAGGA
EST: gi|110728638|gb|EE104382.1|EE104382
EST:     ACGTGCTTTTCACACATAAGAATATCAACATTACATACAACAAAAATCAG                         ATTATTCATGTTAATCTTTCTCAAGAGAACCCAAAACCGATGGAAGCAGGA
genomic: ACGTGCTTTTCACACATAAGAATATCAACATTACATACAACAAAAATCAGgtttgtggtt ... attcttacagATTATTCATGTTAATCTTTCTCAAGAGAACCCAAAACCGATGGAAGCAGGA
EST: gi|110708664|gb|EE086465.1|EE086465
EST:     ACGTGCTTTTCACACATAAGAATATCAACATTACATACAACAAAAATCAG                         ATTATTCATGTTAATCTTTCTCAAGAGAACCCAAAACCGATGGAAGCAGGA
genomic: ACGTGCTTTTCACACATAAGAATATCAACATTACATACAACAAAAATCAGgtttgtggtt ... attcttacagATTATTCATGTTAATCTTTCTCAAGAGAACCCAAAACCGATGGAAGCAGGA