1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATACCTATTAAGGCACCTGGTAGAGCTCGTGGTGAGTTGGAAATTACGTACTTGGATGAGGAGTTAAGgtgagttgaatacagtttacaacttatataaacttgaaagttttccaatagttctactcagctctctttcaaattctccccttggcccgttgcttttact...
species | Vitis vinifera |
transcript | Vv12s0034g01210.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGTAGAGCTCGTGGTGAGTTGGAAATTACGTACTTGGATGAGGAGTTAAG AGTATCAAGAGGCGACAAAGGAAACTTGTTCATCTTGAAAATGATCGACCCEST: gi|18458554|gb|BM436832.1|BM436832
genomic: GGTAGAGCTCGTGGTGAGTTGGAAATTACGTACTTGGATGAGGAGTTAAGgtgagttgaa ... tccattgcagAGTATCAAGAGGCGACAAAGGAAACTTGTTCATCTTGAAAATGATCGACCC
EST: GTAGAGCTCGTGGTGAGTTGGAAATTACGTACTTGGATGAGGANGT-AAG AGTATCAAGAGGCGACANAGGAAACTTGTTCATCTTGAAAATGATCGACCEST: gi|110386525|gb|EC951125.1|EC951125
genomic: GTAGAGCTCGTGGTGAGTTGGAAATTACGTACTTGGATGAGGA-GTTAAGgtgagttgaa ... tccattgcagAGTATCAAGAGGCGACAAAGGAAACTTGTTCATCTTGAAAATGATCGACC
EST: GGTAGAGCTCGTGGTGAGTTGGAAATTACGTACTTGGATGAGGAGTTAAG AGTATCAAGAGGCGACAAAGGAAACTTGTTCATCTTGAAAATGATCGACCC
genomic: GGTAGAGCTCGTGGTGAGTTGGAAATTACGTACTTGGATGAGGAGTTAAGgtgagttgaa ... tccattgcagAGTATCAAGAGGCGACAAAGGAAACTTGTTCATCTTGAAAATGATCGACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACCTATTAAGGCACCTGGTAGAGCTCGTGGTGAGTTGGAAATTACGTACTTGGATGAGGAGTTAAGgtgagttgaatacagtttacaacttatataaacttgaaagttttccaatagttctactcagctctctttcaaattctccccttggcccgttgcttttact
- - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctcccc