1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTATTTAATGAATATGAAGAATATGATTTTGCAAGGACAGGAAGCACTGCAGTAGAAAAGgtgtgtggtgctttttcattaatcttatatgccaatattttggtagggaagcagtaaatgtatgctgctgttgtatgttgcatggactctggtataagta...
species | Vitis vinifera |
transcript | Vv12s0034g01000.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AATATGAAGAATATGATTTTGCAAGGACAGGAAGCACTGCAGTAGAAAAG GTGGAGCTTAAAGAAGGTCCTCTTGATCAGTTCACACATGAGATGGAACCCEST: gi|83274500|gb|DV938597.1|DV938597
genomic: AATATGAAGAATATGATTTTGCAAGGACAGGAAGCACTGCAGTAGAAAAGgtgtgtggtg ... tatgtttcagGTGGAGCTTAAAGAAGGTCCTCTTGATCAGTTCACACATGAGATGGAACCC
EST: AATATGAAGAATATGA-TTTGCAAGGACAGGAAGCACTGCAGTAGAAAAG GTGGAGCTTAAAGAAGGTCCTCTTGATCAGTTCACACATGAGATGGAACCCEST: gi|110372678|gb|EC936863.1|EC936863
genomic: AATATGAAGAATATGATTTTGCAAGGACAGGAAGCACTGCAGTAGAAAAGgtgtgtggtg ... tatgtttcagGTGGAGCTTAAAGAAGGTCCTCTTGATCAGTTCACACATGAGATGGAACCC
EST: AATATGAAGAATATGATTTTGCAAGGACAGGAAGCACTGCAGTAGAAAAG GTGGAGCTTAAAGAAGGTCCTCTTGATCAGTTCACACATGAGATGGAACCCEST: gi|71868915|gb|DT017970.1|DT017970
genomic: AATATGAAGAATATGATTTTGCAAGGACAGGAAGCACTGCAGTAGAAAAGgtgtgtggtg ... tatgtttcagGTGGAGCTTAAAGAAGGTCCTCTTGATCAGTTCACACATGAGATGGAACCC
EST: AATATGAAGAATATGATTTTGCAAGGACAGGAAGCACTGCAGTAGAAAAG GTGGAGCTTAAAGAAGGTCCTCTTGATCAGTTCACACATGAGATGGAACCCEST: gi|110361718|gb|EC925211.1|EC925211
genomic: AATATGAAGAATATGATTTTGCAAGGACAGGAAGCACTGCAGTAGAAAAGgtgtgtggtg ... tatgtttcagGTGGAGCTTAAAGAAGGTCCTCTTGATCAGTTCACACATGAGATGGAACCC
EST: AATATGAAGAATATGATTTTGCAAGGACAGGAAGCACTGCAGTAGAAAAG GTGGAGCTTAAAGAAGGTCCTCTTGATCAGTTCACACATGAGATGGAACCC
genomic: AATATGAAGAATATGATTTTGCAAGGACAGGAAGCACTGCAGTAGAAAAGgtgtgtggtg ... tatgtttcagGTGGAGCTTAAAGAAGGTCCTCTTGATCAGTTCACACATGAGATGGAACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATTTAATGAATATGAAGAATATGATTTTGCAAGGACAGGAAGCACTGCAGTAGAAAAGgtgtgtggtgctttttcattaatcttatatgccaatattttggtagggaagcagtaaatgtatgctgctgttgtatgttgcatggactctggtataagta
- - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agggaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagtaaa