Sequence
atgc intronic sequence ATGC exonic sequenceCATCCCACCCCATCCCATGTACAAAGTAGATCATAATCATCCAGGCATTGGCGTCCCGGCTCGACATTCGGGCCCCTTTCCTCTCTTCGATTTTCATCCCgtgagcaccctctctttatttctcatctttactcattgtctagctaaagtatcacactataattcgtgaccattccgtggtctattgccttaagccttgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g03100.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G44330.1 (Glycine max), 5'ss of exon 5
CATCCCACCCCATCCCATGTACAAAGTAGATCATAATCATCCAGGCATTGGCGTCCCGGCTCGACATTCGGGCCCCTT-TCCTCTCTTCGATTTTCATCCCgtgagcaccctctctttatttctcatctttactcattgtctagctaaagtatcacactataattcgtgaccattccgtggtctattgcc-ttaagccttgt-
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AGATTTGGAAGTCCCCCTGTGCCCGGCATCCCACCCCATGCCATGTACAAAG--CAGATCACGACATTGGCCTCCCTGGTCCCCTTTTCGACTTTTATCCGgtaaatttcttttttct-ttttttaaaaaaaataattttctcgtacaaatataaacatgtt-tgcatgtgtataagagagtctaattcagttgaacaaaata
upper sequence: Vv12s0028g03100.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G13430.1 (Glycine max), 5'ss of exon 5
---------------------CATCCCACCCCATCCCATGTACAAAGTAGATCATAATCATCCAGGCATTGGCGTCCCGGCTCGACATTCGGGCCCCTTTCCTCTCTTCGATTTTCATCCCgtgagcaccctctctttatttctcatctttactcattgtctagctaaagtatcacactata-attcgtgaccattccgtggtctattgccttaagccttgt
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TGGAAGCGCCCCTGTCCCCGGCATCCCACCCCATGCCATGTACAAAGCAGATCAC---------GGCATTGGCGTCCTTG------------GTCCCAGTTCCCTCTTGGACTTTCATCCGgtaattttttttttgtcatctagtctttattttaattttctcacacaaacacaaagatgtttaccaaataatctaactcagttaattgaataaaatatta-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30295668|gb|CB972462.1|CB972462EST: GCGTCCCGGCTCGACATTCGGGCCCCTTTCCTCTCTTCGATTTTCATCCC TCCAAAGAGACCATAGATGCAGCCATTGGAGATGCTTTATCAAAGCCATGG
genomic: GCGTCCCGGCTCGACATTCGGGCCCCTTTCCTCTCTTCGATTTTCATCCCgtgagcaccc ... tatattgcagTCCAAAGAGACCATAGATGCAGCCATTGGAGATGCTTTATCAAAGCCATGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATCCCACCCCATCCCATGTACAAAGTAGATCATAATCATCCAGGCATTGGCGTCCCGGCTCGACATTCGGGCCCCTTTCCTCTCTTCGATTTTCATCCCgtgagcaccctctctttatttctcatctttactcattgtctagctaaagtatcacactataattcgtgaccattccgtggtctattgccttaagccttgt
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