Sequence
atgc intronic sequence ATGC exonic sequenceATTGCGATGAAAGAACTTCGTGAGAGGAAGATACCCTTCACCATTCGGCGCTACCTGCCTGATGGAAGgtaagggtcttagtttgaagttactggccttctttttaggttagccatacttagttgaactccctgctctttttctgttttcatctgcttttcttctatattgaaaacctttggttctgtgacatgctccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g01210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G29520.1 (Glycine max), 5'ss of exon 5
ATTGCGATGAAAGAACTTCGTGAGAGGAAGATACCCTTCACCATTCGGCGCTACCTGCCTGATGGAAGgtaagggtcttagtttgaagttact--ggccttctttttaggttagccatacttagttgaactccctgctctttttctgttttcatctgcttttcttctatattgaaaacctttggttctgtgacatgctccag
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ATTGCTATGAAGGAGCTTCGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaatacttggccattatacaagttaggaagttcttttttcttggctgggggaggttaaggttgataacatcatgccatactga-ctgttaatcattttt-ttgcaaatttctccag----------------
upper sequence: Vv12s0028g01210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G38350.2 (Glycine max), 5'ss of exon 5
ATTGCGATGAAAGAACTTCGTGAGAGGAAGATACCCTTCACCATTCGGCGCTACCTGCCTGATGGAAGgtaagggtcttagtttgaagttactggccttctttttaggttagccatactta--gttgaactccctgctctttttctgttttcatctgcttttcttctatattgaaaacctttggttctgtgacatgctccag
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ATTGCTATGAAGGAGCTCCGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaa----tagt----ggccattatacttttttcttggttgggggaggttaaggttgataacattatgccatactgactgtcatcattttttgcaaaattctacag--------------------------
upper sequence: Vv12s0028g01210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S197_12V6.1 (Physcomitrella patens), 5'ss of exon 5
ATTGCGATGAAAGAACTTCGTGAGAGGAAGATACCCTTCACCATTCGGCGCTACCTGCCTGATGGAAGgtaagggtcttagtttga--agttactggccttctttttaggttagccatacttagttgaactccctgctctttttctgttttcatctgcttttct--tcta--tattgaaa----acctttggttctgtgacatgctccag-------------
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ATCGCTATGAAAGAACTTCGGGAGCGGAAAATTCCCTTCACCATTCGTCGCTATCTGCCCGATGGGAGgtacgtctcatactagaataaagtac-aaccaagtagcaagaagtgcaaaatatttttgaggttgacgtgaacatttttttatcttctgttttgttggtcaagttgctgaaatgcaatctgcggcagtctaatattttgtgccgtattgttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|329112229|gb|JG391697.1|JG391697EST: CGTGAGAGGAAGATACCCTTCACCATTCGGCGCTACCTGCCTGATGGAAG TTATGAAGACTGGGGGGTTGATGAATTGATTGTAGAAGACTCATGGAAGAG
genomic: CGTGAGAGGAAGATACCCTTCACCATTCGGCGCTACCTGCCTGATGGAAGgtaagggtct ... catgctccagTTATGAAGACTGGGGGGTTGATGAATTGATTGTAGAAGACTCATGGAAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGCGATGAAAGAACTTCGTGAGAGGAAGATACCCTTCACCATTCGGCGCTACCTGCCTGATGGAAGgtaagggtcttagtttgaagttactggccttctttttaggttagccatacttagttgaactccctgctctttttctgttttcatctgcttttcttctatattgaaaacctttggttctgtgacatgctccag
- - - - - - - - - - GAGAGG
- - - - - - - - - - - AGAGGA
- - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG