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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTACAGTAGTGAAGAAAAAGTAGTGAACTATGTTGGAGAAATGATGTTCTTGCTTGCAGGATCCCACTTTATAGATGGCATTCAATCAGTGCTTTCAGgtatgtgccaatttgcaatatgtacttataatctttaatttgattattcatgacaactgaaatttctatactaatttgtttatactaaacctatatccat...

Basic information

species Vitis vinifera
transcript Vv11s0052g01560.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110717970|gb|EE094290.1|EE094290
EST:     CTTGCTTGCAGGATCCCACTTTATAGATGGCATTCAATCAGTGCTTTCAG                         GCATGGTCAGAGGAAGTGGCAAGCAAAAAATTGGGGCTTTGGTTAACCTAG
genomic: CTTGCTTGCAGGATCCCACTTTATAGATGGCATTCAATCAGTGCTTTCAGgtatgtgcca ... tatttgccagGCATGGTCAGAGGAAGTGGCAAGCAAAAAATTGGGGCTTTGGTTAACCTAG
EST: gi|110708165|gb|EE085398.1|EE085398
EST:     CTTGCTTGCAGGATCCCACTTTATAGATGGCATTCAATCAGTGCTTTCAG                         GCATGGTCAGAGGAAGTGGCAAGCAAAAAATTGGGGCTTTGGTTAACCTAG
genomic: CTTGCTTGCAGGATCCCACTTTATAGATGGCATTCAATCAGTGCTTTCAGgtatgtgcca ... tatttgccagGCATGGTCAGAGGAAGTGGCAAGCAAAAAATTGGGGCTTTGGTTAACCTAG
EST: gi|45770823|gb|CN006675.1|CN006675
EST:     CTTGCTTGCAGGATCCCACTTTATAGATGGCATTCAATCAGTGCTTTCAG                         GCATGGTCAGAGGAAGTGGCAAGCAAAAAATTGGGGCTTTGGTTAACCTAG
genomic: CTTGCTTGCAGGATCCCACTTTATAGATGGCATTCAATCAGTGCTTTCAGgtatgtgcca ... tatttgccagGCATGGTCAGAGGAAGTGGCAAGCAAAAAATTGGGGCTTTGGTTAACCTAG
EST: gi|352777774|gb|FQ466827.1|FQ466827
EST:     CTTGCTTGCAGGATCCCACTTTATAGATGGCATTCAATCAGTGCTTTCAG                         GCATGGTCAGAGGAAGTGGCAAGCAAAAAATTGGGGCTTTGGTTAACCTAG
genomic: CTTGCTTGCAGGATCCCACTTTATAGATGGCATTCAATCAGTGCTTTCAGgtatgtgcca ... tatttgccagGCATGGTCAGAGGAAGTGGCAAGCAAAAAATTGGGGCTTTGGTTAACCTAG
EST: gi|110413757|gb|EC979564.1|EC979564
EST:     TATAGATGGCATTCAATCAGTGCTTTCAG                         GCATGGTCAGAGGAAGTGGCAAGCAAAAAATTGGGGCTTTGGTTAACCTAG
genomic: TATAGATGGCATTCAATCAGTGCTTTCAGgtatgtgcca ... tatttgccagGCATGGTCAGAGGAAGTGGCAAGCAAAAAATTGGGGCTTTGGTTAACCTAG
EST: gi|34542705|gb|CF510937.1|CF510937
EST:     CTTGCTTGCAGGATCCCACTTTATAGATGGCATTCAATCAGTGCTTTCAG                         GCATGGTCAGAGGAAGTGGCAAGCAAAAAATTGGGGCTTTGGTTAACCTAG
genomic: CTTGCTTGCAGGATCCCACTTTATAGATGGCATTCAATCAGTGCTTTCAGgtatgtgcca ... tatttgccagGCATGGTCAGAGGAAGTGGCAAGCAAAAAATTGGGGCTTTGGTTAACCTAG
EST: gi|352773655|gb|FQ472437.1|FQ472437
EST:     TTTGCTTGCAGGATCCCACTTTATAGATGGCATTCAATCAGTGCTTTCAG                         GCATGGTCAGAGGAAGTGGCAAGCAAAAAATTGGGGCTTTGGTTAACCTAG
genomic: CTTGCTTGCAGGATCCCACTTTATAGATGGCATTCAATCAGTGCTTTCAGgtatgtgcca ... tatttgccagGCATGGTCAGAGGAAGTGGCAAGCAAAAAATTGGGGCTTTGGTTAACCTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTACAGTAGTGAAGAAAAAGTAGTGAACTATGTTGGAGAAATGATGTTCTTGCTTGCAGGATCCCACTTTATAGATGGCATTCAATCAGTGCTTTCAGgtatgtgccaatttgcaatatgtacttataatctttaatttgattattcatgacaactgaaatttctatactaatttgtttatactaaacctatatccat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactgaaa