Sequence
atgc intronic sequence ATGC exonic sequenceACTTCTATCTGACATATCGAGATTGGAGGCCAAAGTTGAGAGGCTTGAGTCACAGTTACAAGCAAAAGATAGGGAGATTGCAACCATGACCCGGACGgttaggaacacttaaattttgtaaagtgaaataatctaggaaattggaattaccctattagacattctatgtcagttgtgtctgtttgttgatcggtgtagtagttgtgtatgattag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G00980.1 (Glycine max), 5'ss of exon 5
ACTTCTATCTGACATATCGAGATTGGAGGCCAAAGTTGAGAGGCTTGAGTCACAGTTACAAGCAAAAGATAGGGAGATTGCAACCATGACCCGGACGgttaggaacacttaaattttgtaaagtgaaataatctaggaaattggaattacccta-ttagac-attctatgtcagttgtgtctgtttgttgatcggtgtagtagttgtgtatgattag-----------------------------------------------------
||| | ||||||||||||||||||||||||||||| |||||||| || | |||||| || || |||||||| || || || || | ||||| |||| ||| |||| || | || ||| || | ||| | | ||||| | || | |||||||||| || | | |||| || | | |||
ACTGTTGTCTGACATATCGAGATTGGAGGCCAAAGTGGAGAGGCTGGAAGGTCTACTACAAGTCAAGGACAGGGAGATAGCGACTATTACTAGAACGgtaaggagtgcttgtatttctggttttggca-aacctaaagcat-gttattgtcttgcttagatgaaaagattagaagtgtgtctgttagtcaa--gatgtaacgatttcct-tatttatgcagtgatgctactagatttttgtttaatttgggtagaattccttttatatag
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G07040.2 (Glycine max), 5'ss of exon 5
ACTTCTATCTGACATATCGAGATTGGAGGCCAAAGTTGAGAGGCTTGAGTCACAGTTACAAGCAAAAGATAGGGAGATTGCAACCATGACCCGGACGgttagga-acactt--aaattttgt-------aaagtgaaataatctaggaaattg---gaattaccctattagacat------tctatgtcagttgtgtctgtttgttgatcggtgtagtagttgtgtatgattag-------------------------------
||| | |||||||| |||||||||||||||||||| ||||||||||| || |||||| ||||| |||||||| || || || || | ||||| |||| | ||| |||| | || || || || | ||| ||| || | || ||| | |||| || || | ||| | | | ||| | || ||||
ACTGTTGTCTGACATTTCGAGATTGGAGGCCAAAGTGGAGAGGCTTGAAGGTCAACTACAAGTCAAAGACAGGGAGATAGCGACTATTACTAGAACGgtaaggagatgcttggaaatctggttttggcaaacgtaaagcatgctattgtcttgcttagatgaaaagatcagaagtgtgtccattatgcaagatgcaacaatttccttttttacgcagtgatgctgctagattttgtttaactggggttgaattcctgttatttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294964330|gb|GW838133.1|GW838133EST: AGTCACAGTTACAAGCAAAAGATAGGGAGATTGCAACCATGACCCGGACG GAAGCAAAAGCTACAGCAGCTTTTAAGGCTCAAATAGAAAAATTGCAGCAG
genomic: AGTCACAGTTACAAGCAAAAGATAGGGAGATTGCAACCATGACCCGGACGgttaggaaca ... gtatgattagGAAGCAAAAGCTACAGCAGCTTTTAAGGCTCAAATAGAAAAATTGCAGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTCTATCTGACATATCGAGATTGGAGGCCAAAGTTGAGAGGCTTGAGTCACAGTTACAAGCAAAAGATAGGGAGATTGCAACCATGACCCGGACGgttaggaacacttaaattttgtaaagtgaaataatctaggaaattggaattaccctattagacattctatgtcagttgtgtctgtttgttgatcggtgtagtagttgtgtatgattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT