Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAAAGAGAGAGGGGAATGGCTTCAAAATCTTAAATACGGAGTGTTTGGCCTTGGAAATAGGCAATATGAGCATTTCAATAAGgtgtggaattgcgttccgatttattataaggcttttcttaatctaggagaagaaactatggttttaacttttattgtttctttttcaattatacattattgcgttggttacgcctgatttatgatcttgtccacgggaaacag

Basic information

species Vitis vinifera
transcript Vv11s0052g00880.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g00880.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 5
---GGGAAAGAGAGAGGGGAATGGCTTCAAAATCTTAAATACGGAGTGTTTGGCCTTGGAAATAGGCAATATGAGCATTTCAATAAGgtgtggaattgcgttccgatttattataaggcttttcttaatctaggagaagaaactatggttttaacttttattgtttctttttcaatta-tacattattgcgttggttacgcctgatttatgatcttgtccacgggaaacag
   ||  |  |  |||  | ||||||| | |||||| | || || ||||||||||||||||| ||||||||||||||||| || ||||| || | ||| ||||| |   ||  |  ||||||    |   |   |   ||   | |  |  |    ||  ||||| ||||  |||||| | ||                                                
GGGGGTGAGAAAGGAGAAGGATGGCTTGAGAATCTTCACTATGGTGTGTTTGGCCTTGGAAACAGGCAATATGAGCATTTTAACAAGgtttgca-ttgagttccaaca-atcttctggctttctaaaggttttaatttga--ttttaatcatggagttgcttgttgctttggcaattaatgcag-----------------------------------------------

upper sequence: Vv11s0052g00880.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G07050.2 (Glycine max), 5'ss of exon 5
---GGGAAAGAGAGAGGGGAATGGCTTCAAAATCTTAAATACGGAGTGTTTGGCCTTGGAAATAGGCAATATGAGCATTTCAATAAGgtgtggaattgcgttccgatttattataaggcttttcttaatctaggagaagaaactatggttttaacttttattgtttctttttcaatt-atacattattgcgttggttacgcctgatttatgatcttgtccacgggaaacag
   ||  |  |  |||  |  |||||||| |||||| | || || ||||||||||||||||| ||||| ||||||||||| || ||||| || | |||  |||  |   |||||   |  ||||| |   |   |   ||   | |  |  |    ||  | ||| || |  ||||| || ||                                                
GGGGGTGAGAAAGGAGAAGGGTGGCTTCAGAATCTTCACTATGGTGTGTTTGGCCTTGGAAACAGGCAGTATGAGCATTTTAACAAGgtctgca-ttggattcttac--attattctggctttctaaggtttcaatttga--ttttaatcatggagttgttggttgctgtggcaattgatgcag-----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721502|gb|FC069730.1|FC069730
EST:     ATACGGAGTGTTTGGCCTTGGAAATAGGCAATATGAGCATTTTCA-TAAG                         GTTGCAAAGGTGGTCGATGATATCATTACCGAGCAGG
genomic: ATACGGAGTGTTTGGCCTTGGAAATAGGCAATATGAGCATTT-CAATAAGgtgtggaatt ... cgggaaacagGTTGCAAAGGTGGTCGATGATATCATTACCGAGCAGG
EST: gi|71863842|gb|DT012897.1|DT012897
EST:     AATACGGAGTGTTTGGCCTTGGAAATAGGCAATATGAGCATTTCAATAAG                         GTTGCAAAGGTGGTCGATGATATCATTACCGAGCAGG
genomic: AATACGGAGTGTTTGGCCTTGGAAATAGGCAATATGAGCATTTCAATAAGgtgtggaatt ... cgggaaacagGTTGCAAAGGTGGTCGATGATATCATTACCGAGCAGG