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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGTATGATAAGGAAGAGAAGGCAGCTAGAGCTTATGATCTCGCCGCTCTTAAGTACTGGGGTCCGACCACCACCACTAACTTCCCTgtaagtttggattgttctatgaaatttagacgctaatgcttcattttcgtcaaagttttagagacattaacctttttttcttttgggtttttttttttaaatttttttttgaaaaag

Basic information

species Vitis vinifera
transcript Vv11s0052g00840.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g00840.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g55970.2 (Oryza sativa), 5'ss of exon 4
GTGGGTATGATAAGGAAGAGAAGGCAGCTAGAGCTTATGATCTCGCCGCTCTTAAGTACTGGGGTCCGACCACCACCACTAACTTCCCTgtaagtttggattgttctatgaaatttagacgctaatgcttcattttcgtcaaa-----gttttagagacat-taacctttttttcttttgggtttttttttttaaatttttttttgaaaaag------------------------------------------------------------
|||| ||||||||||| ||||| || || || || |||||||| |||||  | |||||||||||||| | |||||| || ||||| || |||| |     |  | |    | ||  ||| |    |  | ||| ||    |        |  |  | | || || |   |  ||  |    || | |  |   |   | |   |                                                                    
GTGGCTATGATAAGGAGGAGAAAGCGGCGAGGGCGTATGATCTTGCCGCGTTGAAGTACTGGGGTCCTAGCACCACAACCAACTTTCCGgtaattaactctcatgcatatatataaagatggatttattacatatttacaatgcatgcatgatcaaaatatatagctcctgattgatgcaagtgtgtagtaaaagcatgtgcatcatgcgtatatgtgtgtgtgtttttggttgatgtatctttatggggcaagctgtttataatctttcag

upper sequence: Vv11s0052g00840.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G086573_T01 (Zea mays), 5'ss of exon 5
GTGGGTATGATAAGGAAGAGAAGGCAGCTAGAGCTTATGATCTCGCCGCTCTTAAGTACTGGGGTCCGACCACCACCACTAACTTCCCTgtaagt--ttggattgttctatga---------------------------aatttagacgctaatgct--tcattttcgtcaaagttt-----tagagacattaacctttttttcttttgggtttttttttttaaatttttttttgaaaaag--------------
|||| ||||||||||| |||||||| || || || |||||||| || ||| | |||||||||||| | | ||||||||| ||||| || |||||    | ||| |   |||||                            |   | ||||| ||||      | | |    |||  |     |||||| ||  | || | | | |  ||| | | | | |     | ||| |  |  ||||              
GTGGCTATGATAAGGAGGAGAAGGCTGCCAGGGCGTATGATCTTGCAGCTTTGAAGTACTGGGGTTCTAGCACCACCACCAACTTTCCGgtaagcgcatagatagacgtatgactagtagctataaaagaaaaaaagagagagacaaacgctgatgcagagtgtgtgcaatgaagcgtctaggtagagatatctaactatctgtgtgctggatgtatatatc---gtctttatggggcaaaggattatcgtttcag

upper sequence: Vv11s0052g00840.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G07010.1 (Glycine max), 5'ss of exon 5
GTGGGTATGATAAGGAAGAGAAGGCAGCTAGAGCTTATGATCTCGCCGCTCTTAAGTACTGGGGTCCGACCACCACCACTAACTTCCCTgtaagtttggattgttctatgaaatttagac-gctaatgcttca--ttttcgtcaaagttttagagacattaacctttttttcttttgggtttttttttttaaatttttttttgaaaaag-------------------------------
|||| ||||| ||||| || |||||||| ||||||||||||||||| ||||| |||||||||||||| || |||||||||||||| |||||||||   ||  | | ||| |  || |     | ||||  | |  |||| ||   | |||  |     |||  |     |  | ||   |  ||| ||  | | ||   |||||  |                                 
GTGGTTATGACAAGGAGGATAAGGCAGCCAGAGCTTATGATCTCGCAGCTCTCAAGTACTGGGGTCCAACTACCACCACTAACTTTCCTgtaagt--agaaagatatattattttcattttaccaatggcttaattttttgttgtattttatgtattgttatgcaaccctcatctttaatagtttattcaacacttcgatttgatgatctttaatgtatattttattctgcatttcacag

upper sequence: Vv11s0052g00840.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G00950.1 (Glycine max), 5'ss of exon 5
GTGGGTATGATAAGGAAGAGAAGGCAGCTAGAGCTTATGATCTCGCCGCTCTTAAGTACTGGGGTCCGACCACCACCACTAACTTCCCTgtaagtttg-gattgttctatgaaatttagac----gctaat-----gcttcattttc--gtcaaagttttagagacattaacctttttttcttttgggtttttttttttaaatttttttttgaaaaag---------------
|||| ||||| |||||||| |||||||| || ||||| |||||||| ||||| |||||||||||||| || |||||||| ||||| || ||||||    |  | |||  |  | || | |     | ||||     | || |||||   || ||   | ||| |   | ||   ||      || | |||  |  | || ||| |  |  |  |                   
GTGGTTATGACAAGGAAGATAAGGCAGCCAGGGCTTACGATCTCGCAGCTCTCAAGTACTGGGGTCCAACTACCACCACCAACTTTCCCgtaagtagaaggatattcctttcatttcacaaatgggttaattttttgttttattttttagttaatactatagtgtattcaagtattcaacacttcgagttgataatctttaatgtaataatacatttattttgcatttcacag

upper sequence: Vv11s0052g00840.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G57390.1 (Arabidopsis thaliana), 5'ss of exon 5
GTGGGTATGATAAGGAAGAGAAGGCAGCTAGAGCTTATGATCTCGCCGCTCTTAAGTACTGGGGTCCGACCACCACCACTAACTTCCCTgtaagtttggattgttctatgaaatttagacgctaatgcttcattttcgtcaaagttttagagacattaacctttttttcttttgggtttttttttttaaatttttttttgaaaaag
|||| |||||||||||||| || |||||||||||||| || || || ||||||||||| |||||||| || || || ||||| ||||| |||| ||||      ||| | |  |||  | |    ||  | | | | ||||   || ||      || |    || |     |   |  || | ||                    
GTGGTTATGATAAGGAAGATAAAGCAGCTAGAGCTTACGACCTTGCAGCTCTTAAGTATTGGGGTCCTACAACTACGACTAATTTCCCGgtaattttg------tctctcatttttgtatgtc--tgtctgaatat-gtcaggattgtattttagttgattcattatctggctaaatacttgtattag------------------

upper sequence: Vv11s0052g00840.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ17692 (Selaginella moellendorffii), 5'ss of exon 2
GTGGGTATGATAAGGAAGAGAAGGCAGCTAGAGCTTATGATCTCGCCGCTCTTAAGTACTGGGGTCCGACCACCACCACTAACTTCCCTgtaagtttggattgttctatgaaatttagacgctaatgcttcattttcgtcaaagttttagagacattaacctttttttcttttgggtttttttttttaaatttttttttgaaaaag
| |||||||||  ||| ||||||||||| |||||||| ||||| || ||||| ||||||||||| || || || || || ||||| || |||||     | |  | |    ||  ||    ||     | ||   ||    |  || | |     || |                                               
GGGGGTATGATGCGGAGGAGAAGGCAGCAAGAGCTTACGATCTGGCAGCTCTCAAGTACTGGGGGCCTACGACAACTACAAACTTTCCGgtaag----aactaatgtg-acaacgtaagttctttctttgcaagctcacagattttctggttgtgttgaag---------------------------------------------

upper sequence: Vv11s0052g00840.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ16224 (Selaginella moellendorffii), 5'ss of exon 2
GTGGGTATGATAAGGAAGAGAAGGCAGCTAGAGCTTATGATCTCGCCGCTCTTAAGTACTGGGGTCCGACCACCACCACTAACTTCCCTgtaagtttggattgttctatgaaatttagacgctaatgcttcattttcgtcaaagttttagagacattaacctttttttcttttgggtttttttttttaaatttttttttgaaaaag
| || ||||||  ||| ||||||||||| |||||||| ||||| || ||||| ||||||||||| || || || || || ||||| || |||||     | |  | |    ||  ||     |     | ||   ||    |  || | |     || |                                               
GGGGATATGATGCGGAGGAGAAGGCAGCAAGAGCTTACGATCTGGCAGCTCTCAAGTACTGGGGGCCTACGACAACTACAAACTTTCCGgtaag----aactaatgtg-acaacgtaagttttttctttgcaagctcacagattttctggttgtgttgaag---------------------------------------------