1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCCTTCTAAGGAAATTAAGAAACCTTTGAGTGATAATGAGTGTGTTAAAGAAACCCATTCAGTTCTCCGCGAAGGTCATCAGGCAATCTTTGATGAGCAGgtaggttgttctttttcactttaatttgttgtccccttcatgcttctttgaacctttatttagctcttttggttcatctcatccag
species | Vitis vinifera |
transcript | Vv11s0016g05020.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAACCCATTCAGTTCTCCGCGAAGGTCATCAGGCAATCTTTGATGAGCAG GTTTTTGATTTAGTGAATCGCGAAGCATTCAACTCATCATCAGGAGTCAATEST: gi|161707289|gb|FC057694.1|FC057694
genomic: AAACCCATTCAGTTCTCCGCGAAGGTCATCAGGCAATCTTTGATGAGCAGgtaggttgtt ... tctcatccagGTTTTTGATTTAGTGAATCGCGAAGCATTCAACTCATCATCAGGAGTCAAT
EST: AACCC-TTCAGTTCTCCGCGAAGGTCATCAGGAC-ATCTTTGATGAGCAG GTTTTTGATTTAGTGAATCGCGAAGCATTCAACTCATCATCAGGAGTCAAT
genomic: AACCCATTCAGTTCTCCGCGAAGGTCATCAGG-CAATCTTTGATGAGCAGgtaggttgtt ... tctcatccagGTTTTTGATTTAGTGAATCGCGAAGCATTCAACTCATCATCAGGAGTCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTCTAAGGAAATTAAGAAACCTTTGAGTGATAATGAGTGTGTTAAAGAAACCCATTCAGTTCTCCGCGAAGGTCATCAGGCAATCTTTGATGAGCAGgtaggttgttctttttcactttaatttgttgtccccttcatgcttctttgaacctttatttagctcttttggttcatctcatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG