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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTTATTTTATGGATTCTGCTCCTATTGTGGATGAGGATGGCAGAAAACTGCCCAAACTTGATGACAGCACTGCGGATTATATCCGCACAGGACTAACTgtaagtcaaatgttgttgaattatgaaggttattgacatgttttatgtgtagtagttttttttctattgctgatttttggtttctcattctgatattatattttcaatttacag

Basic information

species Vitis vinifera
transcript Vv11s0016g04480.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g04480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G08060.2 (Glycine max), 5'ss of exon 4
GCCTTATTTTATGGATTCTGCTCCTATTGTGGATGAGGATGGCAGAAAACTGCCCAAACTTGATGACAGCACTGCGGATTATATCCGCACAGGACTAACTgtaagtcaaatgttgttgaattatgaaggttattgacatgttttatgtgtagtagttttttttctattgctgatttttggtttctcattctgatattatattttcaatttacag
  |||||||| ||||||||| ||| ||| |||| ||||||  |||||||||| | |||||||| |||| ||| ||||||||||| || || ||  ||| |||| ||||| |  | ||    | |     ||  || |||   || | | |  |    || ||||   || || ||| |  ||     ||   ||| |  || |||| ||| |||
ATCTTATTTTGTGGATTCTGATCCAATTCTGGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGTgtatgtcaactagtttt----ttttctaattgctgtcattaatt-tattttctcaaattatttcagatgttgttttctaatta---gtttacataatgcatcttcattttgcag