Sequence
atgc intronic sequence ATGC exonic sequenceACTGACACAGCTTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTCCAGAGTCAAATTGAGgtgatgtttcttcccttccttttatttttacaaacaaccatgaactagtagtgacgggcacaggtttttaaagcttcattttcagttattgaagttctaaatatattcccttctcttatccccctaaaatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os05g14010.1 (Oryza sativa), 5'ss of exon 5
ACTGACACAGCTTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTCCAGAGTCAAATTGAGgt--gatgtttcttcccttccttttatttttacaaacaaccatgaactagtagtgacgggcacag-gtttttaaagcttcattttcagttattgaagttctaaatatattcccttctcttatccccctaaaatgcag
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ACTGACACAGCGTCTGTACTGCAAGAGACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGgtccaatctctctctctcactttctatagctctgtctgcgtgtgtgcgtgt-gtgtttaatttagagggtgaaaaaaaatacttcccgttattt---ttatcaa---------------------------------
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G105494_T02 (Zea mays), 5'ss of exon 5
ACTGACACAGCTTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTCCAGAGTCAAATTGAGgtgatgtttcttcccttccttttatttttacaaacaaccatgaactagtagtgacgggcacaggttt---ttaaagcttcattttcagttattgaagttctaaatatattcccttctcttatccccctaaaatgcag
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ACTGACACAGCGTCTGTACTCCTTGAAGCCATTGGGTACATCAGATTCCTCCATAGTCAAATTGAGgtccagctcttctctctcacaccatctttctctctctctccatgc--gtgcccatgcctgcagccctggcctcaaactgtagca-cagt-acaaggatcataga---------------------------------
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G072238_T03 (Zea mays), 5'ss of exon 5
ACTGACACAGCTTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTCCAGAGTCAAATTGAGgtgatgtttcttcccttccttttatttttacaaacaaccatgaactagtagtgacgggcacaggtttttaaagcttcattttcagttattgaagttctaaatatattcccttctcttatccccctaaaatgcag
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ACTGACACGGCGTCTGTGCTGCAAGAGACCATTGGGTATATCAGATTCCTCCTGGGTCAAATTGAGgtccagtctctctctctc--tctgtctgtctgaaccatca-gaagcagtatgggttcacataaaattaataaataatgtggccagcc-ccaccggccacaacgc------------------------------
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G09180.3 (Glycine max), 5'ss of exon 4
ACTGACACAGCTTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTCCAGAGTCAAATTGAGgtgatgtttcttcccttccttttatttttacaaacaaccatgaactagtagtgacgggcacaggtttttaaagcttcattttcagttattgaagttctaaatatattcccttctcttatccccctaaaatgcag
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ACTGACACGGCCTCTGTCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGgtgatgtttctcctcctcc----------acgagcaa--gtgatggaatgctgcacgctgttaaagcctaatggtccattt-cacacagagagattggatctatatacatttt---------------------
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G35610.1 (Glycine max), 5'ss of exon 5
ACTGACACAGCTTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTCCAGAGTCAAATTGAGgtgat----gtttcttcccttccttttatttttacaaacaaccatga---------actagtagtgacgg-gcacaggtttttaaagcttcat--tttca-gttattgaagttctaaatatattcccttctcttatccccctaaaatgcag----------------------------
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ACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTTCAGAGTCAAATTGAGgtaattaatgtttattctcctctgtcaatttttgcaaacaaccacgagagtcagtgaatagtactcatggcacgctagatgttaaaagtccattatttcacgttgttctaatcctt--ctgcttccactttattagtttttgaagttctaaaaatattctcttttccccgtggatgcag
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G04110.2 (Glycine max), 5'ss of exon 5
ACTGACACAGCTTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTCCAGAGTCAAATTGAGgt----gatgtttcttcccttcctttt----atttttacaaacaaccatg------aactagtagtgacgg-gcacaggtttttaaagcttcattttcagttattgaagttctaaatatattcccttctcttatccccctaaaatgcag--------------------------------
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ACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGgtcattaatgtttattctcctcgctctgtcgatttttgcaaacgaccacgagagtcagtgaatagtgatggcacgctagatgttagaagtccattatttcacgttg---ttctaatctttctgcttccactttagtttttgaagttctaaaaatattctcttttccccgtggatgatgcag
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G20100.1 (Arabidopsis thaliana), 5'ss of exon 5
ACTGACACAGCTTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTCCAGAGTCAAATTGAGgtgatgtttcttcccttc-cttttatttttacaaacaaccatgaactagtagtgacgggcacaggtttttaaagcttcattttcagttattgaagttctaaatatattcccttctcttatccccctaaaatgcag
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ACTGACACAGCCTCTGTCTTGTCGGAGGCTATTGGATACATTAGATTCCTCCACAGTCAAATTGAGgtgacttgtcttttccaaactaccatgcttcttatt--tcatttatt--tcaagacaaatatt--tatttgaatcttc-ctcacaactacaacacaaataatcattt----------------------------
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G29100.1 (Arabidopsis thaliana), 5'ss of exon 5
ACTGACACAGCTTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTCCAGAGTCAAATTGAGgtgatgtttcttcccttccttttatttttacaaacaaccatgaactagtagtgacgggcacaggtttttaaagcttcattt-tcagttattgaagttctaaatatattcccttctcttatccccctaaaatgcag
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ACTGACACAGCCTCTGTCCTGTCGGAAGCTATTGGATACATTAGATTCCTTCAGAGTCAAATTGAGgtg-tgactcgtcttttcca---aactccaaatattctcattcagtaa-aataa-aaataatgcttatgattactccgtttaccaaaaaaaaaaagaagaaaaaaa-----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71871899|gb|DT020954.1|DT020954EST: TCTTGTTAGAAGCTATTGGTTATATCAGATTCCTCCAGAGTCAAATTGAG GCTCTCAGCTTACCGTACTTGGGCAGTGGATCAGGAAATATGAGGCAGCAA
genomic: TCTTGTTAGAAGCTATTGGTTATATCAGATTCCTCCAGAGTCAAATTGAGgtgatgtttc ... taaaatgcagGCTCTCAGCTTACCGTACTTGGGCAGTGGATCAGGAAATATGAGGCAGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTGACACAGCTTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTCCAGAGTCAAATTGAGgtgatgtttcttcccttccttttatttttacaaacaaccatgaactagtagtgacgggcacaggtttttaaagcttcattttcagttattgaagttctaaatatattcccttctcttatccccctaaaatgcag
- - - - - - - - - - - AGAAGC