1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTTGACCTTGAACGTGATTTCTTTGATAAACCAGAAATGCTTGGTGACCCTATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAGgtcactggattctatcatcaaacttgtaccatttaaaactgtatataactcatatcgtgatgggttttcccctttttccatcag
species | Vitis vinifera |
transcript | Vv11s0016g03200.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAG GTCAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTGEST: gi|71881554|gb|DT030609.1|DT030609
genomic: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAGgtcactggat ... tttccatcagGTCAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTG
EST: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAG GTGAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTGEST: gi|71887181|gb|DT036236.1|DT036236
genomic: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAGgtcactggat ... tttccatcagGTCAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTG
EST: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAG GTGAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTGEST: gi|77589174|gb|DV223847.1|DV223847
genomic: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAGgtcactggat ... tttccatcagGTCAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTG
EST: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAG GTGAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTGEST: gi|110690968|gb|EE068534.1|EE068534
genomic: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAGgtcactggat ... tttccatcagGTCAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTG
EST: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAA GTCAAATCTCTGATCCCTTGAAGGGAATATATGGAGCCAG-TGCACATTCTEST: gi|71884795|gb|DT033850.1|DT033850
genomic: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAGgtcactggat ... tttccatcagGTCAAATCTCTGATCCCTTGAAGGGAATATATGGAGC-AGGTGCACATTCT
EST: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAG GTGAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTGEST: gi|110404543|gb|EC969762.1|EC969762
genomic: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAGgtcactggat ... tttccatcagGTCAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTG
EST: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAG GTCAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTGEST: gi|30253270|gb|CB970821.1|CB970821
genomic: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAGgtcactggat ... tttccatcagGTCAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTG
EST: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAG GTCAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTGEST: gi|110421097|gb|EC987385.1|EC987385
genomic: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAGgtcactggat ... tttccatcagGTCAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTG
EST: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAG GTCAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTGEST: gi|71884047|gb|DT033102.1|DT033102
genomic: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAGgtcactggat ... tttccatcagGTCAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTG
EST: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAG GTGAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTG
genomic: TATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAGgtcactggat ... tttccatcagGTCAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGACCTTGAACGTGATTTCTTTGATAAACCAGAAATGCTTGGTGACCCTATTGCAACCTTGCGCCTACTGCATTATGAAGGTGGAAATCAAATTGAAGgtcactggattctatcatcaaacttgtaccatttaaaactgtatataactcatatcgtgatgggttttcccctttttccatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG