1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGTTACAAATGGAGGATGTGCAGACAGATCTTACGGTTATTTGAGCAAGGACTTCTCCTTTCCAGCAGGGAGCTTCGCTGCACTCCATTTTCCCACGGTAgttgtactctgcctaatttgtgatgttttaggctgtaatactctaggagtaataaaaatatttgcttagacatttacttcaaatactttaagatatttgg...
species | Vitis vinifera |
transcript | Vv11s0016g02550.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTTCTCCTTTCCAGCAGGGAGCTTCGCTGCACTCCATTTTCCCACGGTA GTACACAGCAATGAAACAAGCCTATCAGCTAGATGTCGAEST: gi|37190697|gb|CF610046.1|CF610046
genomic: ACTTCTCCTTTCCAGCAGGGAGCTTCGCTGCACTCCATTTTCCCACGGTAgttgtactct ... taatatctagGTACACAGCAATGAAACAAGCCTATCAGCTAGATGTCGA
EST: ACTTCTCCTTTCCAGCAGGGAGCTTCGCTGCACTCCATTTTCCCACGGTA GTACACAGCAATGAAACAAGCCTATCAGCTAGATGTCGAAGAATATATGCTEST: gi|71860554|gb|DT009609.1|DT009609
genomic: ACTTCTCCTTTCCAGCAGGGAGCTTCGCTGCACTCCATTTTCCCACGGTAgttgtactct ... taatatctagGTACACAGCAATGAAACAAGCCTATCAGCTAGATGTCGAAGAATATATGCT
EST: ACTTCTCCTTTCCAGCAGGGAGCTTCGCTGCACTCCATTTTCCCACGGTA ---CACAGCAATGAAACAAGCCTATCAGCTAGATGTCGAAGAATATATGCT
genomic: ACTTCTCCTTTCCAGCAGGGAGCTTCGCTGCACTCCATTTTCCCACGGTAgttgtactct ... taatatctagGTACACAGCAATGAAACAAGCCTATCAGCTAGATGTCGAAGAATATATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTACAAATGGAGGATGTGCAGACAGATCTTACGGTTATTTGAGCAAGGACTTCTCCTTTCCAGCAGGGAGCTTCGCTGCACTCCATTTTCCCACGGTAgttgtactctgcctaatttgtgatgttttaggctgtaatactctaggagtaataaaaatatttgcttagacatttacttcaaatactttaagatatttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata