Sequence
atgc intronic sequence ATGC exonic sequenceACTTGGAGACTGAATGGGTTGAAGAGGATGAGCCAGGTGTTTACATTACCATCAGAGCGCTTCCAGGTGGTACACGGGAGCTTAGACGTGTCAGATTCAGgcaagtgaacttctgttgtaattataatagctttagagtagtccccttaagaggcaagccttgtgacaacttttttaagttgccacatagcatgtggaga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g01460.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G16800.1 (Glycine max), 5'ss of exon 5
ACTTGGAGACTGAATGGGTTGAAGAGGATGAGCCAGGTGTTTACATTACCATCAGAGCGCTTCCAGGTGGTACACGGGAGCTTAGACGTGTCAGATTCAGgcaagtga-acttctgttgtaattataata-gctttagagtagtccccttaagaggcaagccttgtgacaacttttttaagttgccacatagcatgtggaga
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ATTTGGAGACTGAATGGGTTGAACAGGATGAACCTGGGGTTTACATTACGATCAGAGCATTGCCAGGTGGTGCAAGAGAGCTCAAACGAGTCAGGTTCAGgtacttgctgctaattttatgactggaaaatgctctttagcagttcattactatgtcaaatatc-taacca-tttaatacattacgatttaattggcctata
upper sequence: Vv11s0016g01460.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G05900.1 (Glycine max), 5'ss of exon 4
ACTTGGAGACTGAATGGGTTGAAGAGGATGAGCCAGGTGTTTACATTACCATCAGAGCGCTTCCAGGTGGTACACGGGAGCTTAGACGTGTCAGATTCAGgcaagtgaacttctg---ttgtaattataata-gctttagagtagtccccttaagaggcaagccttgtgacaacttttttaagttgccacatagcatgtggaga
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AATTGGAGACTGAATGGGTTGAACAGGATGAACCTGGGGTTTACATTACGATCAGAGCATTGCCAGGTGGTGCAAGAGAGCTCAAACGAGTCAGGTTCAGgtacacttgctgccaatttcatgactggaaaatgccctttagcagttcattactatgtcaaatatc-taacca-tttaatacaataccacttaattggccta--
upper sequence: Vv11s0016g01460.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G07930.1 (Glycine max), 5'ss of exon 3
ACTTGGAGACTGAATGGGTTGAAGAGGATGAGCCAGGTGTTTACATTACCATCAGAGCGCTTCCAGGTGGTACACGGGAGCTTAGACGTGTCAGATTCAGgcaagtgaacttctgttgtaattataatagctttagagtagtccccttaagaggcaagccttgtgacaacttttttaagttgccacatagcatgtggaga------
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ACCTTGACACTGAATGGGTTGAGCAGGATGAGCCTGGGGTTTACATCACCATCAGAGCTCTCCCAGGTGGCAAAAAGGAGCTCAGACGAGTCAGGTTCAGgtatgc------ttgctacaaattttgtgtctttagaccaacacaggttataaataaggttttaaagatctatgactagttggtaattgacataaagctttatgac
upper sequence: Vv11s0016g01460.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G18980.1 (Glycine max), 5'ss of exon 3
ACTTGGAGACTGAATGGGTTGAAGAGGATGAGCCAGGTGTTTACATTACCATCAGAGCGCTTCCAGGTGGTACACGGGAGCTTAGACGTGTCAGATTCAGgcaagtgaacttctgttgtaattataatagctttagagtagtccccttaagaggcaagccttgtgacaactttt--ttaagttgccacatagcatgtggaga
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ACTTTGACAATGAATGGGTTGAGCAGGATGAGCCTGGGGTTTACATCACCATCAGAGCTCTCCTGGGTGGCAAAAAGGAGCTCAGACGAGTCAGGTTCAGgtaggctcgccacaaattgggtctttggatcaacaactttgattttagatgattcaggtttacttaaaggttttactgaaattgatatttggcctaaatg--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110424952|gb|EC991327.1|EC991327EST: ATCAGAGCACTTCCAGGTGGTACACGGGAGCTTAGACGTGTCAGATTCAG CCGAGAACGGTTTGGAGAGATGCATGCTAGACTTTGGTGGGAGGAGAACCG
genomic: ATCAGAGCGCTTCCAGGTGGTACACGGGAGCTTAGACGTGTCAGATTCAGgcaagtgaac ... tttggtgcagCCGAGAACGGTTTGGAGAGATGCATGCTAGACTTTGGTGGGAGGAGAACCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTGGAGACTGAATGGGTTGAAGAGGATGAGCCAGGTGTTTACATTACCATCAGAGCGCTTCCAGGTGGTACACGGGAGCTTAGACGTGTCAGATTCAGgcaagtgaacttctgttgtaattataatagctttagagtagtccccttaagaggcaagccttgtgacaacttttttaagttgccacatagcatgtggaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggcaa