1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGCCAAATCCATGAAGTTTAAGGATGGGTACATGATATCTTCTGGTCAGCCAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacag
species | Vitis vinifera |
transcript | Vv11s0016g01380.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCGCAAGGGAEST: gi|351015000|gb|FQ444289.1|FQ444289
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|110715060|gb|EE092677.1|EE092677
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|26263028|gb|CA814091.1|CA814091
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|26261974|gb|CA813037.1|CA813037
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATNGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCEST: gi|349832316|gb|FQ420877.1|FQ420877
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATC
EST: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|351043060|gb|FQ443902.1|FQ443902
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|110423917|gb|EC990270.1|EC990270
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTTTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|110712407|gb|EE089992.1|EE089992
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAAGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|18459584|gb|BM437862.1|BM437862
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|26267581|gb|CA818644.1|CA818644
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|351025652|gb|FQ426666.1|FQ426666
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|34546837|gb|CF515069.1|CF515069
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|33402357|gb|CF207984.1|CF207984
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCGCAAGGGAEST: gi|110389857|gb|EC954729.1|EC954729
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|34546658|gb|CF514890.1|CF514890
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|33402921|gb|CF208548.1|CF208548
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|110684969|gb|EE062852.1|EE062852
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|110687640|gb|EE065280.1|EE065280
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|34319185|gb|CF371939.1|CF371939
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|110360898|gb|EC924341.1|EC924341
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|110425974|gb|EC992370.1|EC992370
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAEST: gi|110388507|gb|EC953265.1|EC953265
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTTTAAGACAG GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCAAATCCATGAAGTTTAAGGATGGGTACATGATATCTTCTGGTCAGCCAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG