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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAGACCATATGATGTGTGAGgtgcagtactgtacccagttttggactaggataatttaaaaagccactgtcaacattatttatgttctcattgctcctagtttatgtgccttacataccacag

Basic information

species Vitis vinifera
transcript Vv11s0016g00900.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30128999|gb|CB914338.1|CB914338
EST:     ACGTCCAGACCATATGATGTGTGAG                         GTGTGGAATCCCATGGGCATAG
genomic: ACGTCCAGACCATATGATGTGTGAGgtgcagtact ... cataccacagGTGTGGAATCCCATGGGCATAG
EST: gi|30129010|gb|CB914349.1|CB914349
EST:     ACGTCCAGACCATATGATGTGTGAG                         GTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCC
genomic: ACGTCCAGACCATATGATGTGTGAGgtgcagtact ... cataccacagGTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCC
EST: gi|110701993|gb|EE080197.1|EE080197
EST:     ACGTCCCGACCATATGATGTGTGAA                         GTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCCA
genomic: ACGTCCAGACCATATGATGTGTGAGgtgcagtact ... cataccacagGTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCCA
EST: gi|110725486|gb|EE102039.1|EE102039
EST:     ACGTCCCGACCATATGATGTGTGAG                         GTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCCA
genomic: ACGTCCAGACCATATGATGTGTGAGgtgcagtact ... cataccacagGTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCCA
EST: gi|161711973|gb|FC060028.1|FC060028
EST:     ACGTCCAGACCATATGATGTGTGAG                         GTGTGGAATCCCATGGGCATAGTTGGTGTGATGACTGCTTTCAACTTTCCA
genomic: ACGTCCAGACCATATGATGTGTGAGgtgcagtact ... cataccacagGTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCCA