Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTATAAGTGGTTTACTGATCTTGAATCAGCCATGAAGTCAGAGgttagtagtggtttcttgttgcacaatatttggttatggtccattttgtgagttgggcatatggcatctgattcctctctttcattag

Basic information

species Vitis vinifera
transcript Vv11s0016g00350.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 4
TTCTATAAGTGGTTTACTGATCTTGAATCAGCCATGAAGTCAGAGgttagtagtggtt--tcttgttgcac-aatatttggttatggtccattt-tgtgagttgggcatatggcatctgattcctctctttcattag
||||| || |||||||| ||||||||||| |||||||| |||||||| |||| |   |  |||||||   |  | |||  || |   ||  ||| | |   ||| | |  |   | || | ||  |  ||  |    
TTCTACAAATGGTTTACGGATCTTGAATCTGCCATGAAATCAGAGGTCAgtacttagtagtcttgttatgccgacattgtgtaacactctgtttattttgattgcggac-tcttaacttagtctccaattgtag---

upper sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G73430.2 (Arabidopsis thaliana), 5'ss of exon 5
TTCTATAAGTGGTTTACTGATCTTGAATCAGCCATGAAGTCAGAGgttagt-----agtggtt-tcttgttgcacaatatttg---gttatggtccattttgtgagttgggcatatggcatctgattcctctctttcattag
||||| || ||||||||||||||||||||||| |||||||| |||||||||     ||||    || ||||| ||  |  ||    |||  |    |||   |||  || |  ||       |   || | |  |   ||||
TTCTACAAATGGTTTACTGATCTTGAATCAGCGATGAAGTCTGAGgttagtccgttagtgaaagtcatgttgtaccttggttaaaagttgggaaagattacttgaaatgtgtctaaaatgattttctctttttctgagttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122689568|gb|EC941180.1|EC941180
EST:     TTCTATAAGTGGTTTACTGATCTTGAATCAGCCATGAAGTCGGAG                         ACAGAGGAGAAGTACCGCCACTACGTAAACACATTAACAGAGCGCATACAA
genomic: TTCTATAAGTGGTTTACTGATCTTGAATCAGCCATGAAGTCAGAGgttagtagtg ... ctttcattagACAGAGGAGAAGTACCGCCACTACGTAAACACATTAACAGAGCGCATACAA